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miBC: The mouse intestinal Bacterial Collection

This collection includes all cultivable bacterial strains isolated from the intestine of mice (Mus musculus) that are publicly available to date. The resource was built to increase our knowledge of the cultivable diversity of mouse gut microbiomes and to support scientists for colonization experiments in germfree mice by providing a pool of usable strains.

miBC is an initiative from the TU München (Dr. Thomas Clavel) and the Leibniz-Institut DSMZ-German Collection of Microorganisms and Cell Cultures. It is supported by the priority program SPP-1656 of the German Research Foundation (DFG) and by the German Federal Ministry of Science and Education through the German Center of Infection Research (DZIF).

The list below gives detailed information on the strains currently included into the collection (the information is accessible via links through DSM No.).

For further information see the following publication:

http://www.nature.com/articles/nmicrobiol2016131

Species

DSM No.

Acetatifactor muris Pfeiffer et al. 2013

23669

Actinomyces bowdenii Pascual et al. 1999

28589

Acutalibacter muris Lagkouvardos et al. 2016

26090

Akkermansia muciniphila Derrien et al. 2004 emend. Hahnke et al. 2016

26127

Alistipes sp.

27924

Anaerofustis stercorihominis Finegold et al. 2004

28733

Anaerosalibacter sp.

29482

Anaerotruncus colihominis Lawson et al. 2004

28734

Bacillus licheniformis (Weigmann 1898) Chester 1901

28591

Bacillus sp.

28590

Bacillus subtilis (Ehrenberg 1835) Cohn 1872

28592

Bacillus thermoamylovorans Combet-Blanc et al. 1995 emend. Coorevits et al. 2011

28625

Bacteroides acidifaciens Miyamoto and Itoh 2000

100502

Bacteroides caecimuris Lagkouvardos et al. 2016

26085

Bacteroides sartorii Clavel et al. 2010 emend. Sakamoto and Ohkuma 2012

21941

Bacteroides vulgatus Eggerth and Gagnon 1933

28735

Bacteroides xylanisolvens Chassard et al. 2008

100015

Bifidobacterium animalis subsp. animalis (Mitsuoka 1969) Masco et al. 2004

28736

Bifidobacterium animalis subsp. animalis (Mitsuoka 1969) Masco et al. 2004

26074

Blautia caecimuris Lagkouvardos et al. 2016

29492

Blautia coccoides (Kaneuchi et al. 1976) Liu et al. 2008

28737

Blautia coccoides (Kaneuchi et al. 1976) Liu et al. 2008

29138

Blautia coccoides (Kaneuchi et al. 1976) Liu et al. 2008

26115

Cellulosimicrobium cellulans (Metcalf and Brown 1957) Schumann et al. 2001

29131

Clostridioides mangenotii (Prévot and Zimmès-Chaverou 1947) Lawson et al. 2016

29133

Clostridium bolteae Song et al. 2003

29485

Clostridium clostridioforme corrig. (Burri and Ankersmit 1906) Kaneuchi et al. 1976

26114

Clostridium cochlearium (Douglas et al. 1919) Bergey et al. 1923

29358

Clostridium cocleatum Kaneuchi et al. 1979

1551

Clostridium innocuum Smith and King 1962

29132

Clostridium innocuum Smith and King 1962

26113

Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937

29991

Clostridium ramosum (Veillon and Zuber 1898) Holdeman et al. 1971

29355

Clostridium ramosum (Veillon and Zuber 1898) Holdeman et al. 1971

29357

Clostridium sp.

100503

Clostridium sporogenes (Metchnikoff 1908) Bergey et al. 1923

29420

Clostridium sporogenes (Metchnikoff 1908) Bergey et al. 1923

29422

Clostridium symbiosum (Stevens 1956) Kaneuchi et al. 1976

29356

Cuneatibacter caecimuris Lagkouvardos et al. 2016

29486

Enterococcus faecalis (Andrewes and Horder 1906) Schleifer and Kilpper-Bälz 1984

29488

Enterococcus faecalis (Andrewes and Horder 1906) Schleifer and Kilpper-Bälz 1984

32036

Enterococcus gallinarum (Bridge and Sneath 1982) Collins et al. 1984

28564

Enterococcus gallinarum (Bridge and Sneath 1982) Collins et al. 1984

28565

Enterococcus gallinarum (Bridge and Sneath 1982) Collins et al. 1984

100110

Enterococcus hirae Farrow and Collins 1985

28619

Enterorhabdus caecimuris Clavel et al. 2010

21839

Enterorhabdus mucosicola Clavel et al. 2009

19490

Enterorhabdus muris Lagkouvardos et al. 2016

29508

Escherichia coli (Migula 1895) Castellani and Chalmers 1919

28618

Extibacter muris Lagkouvardos et al. 2017

28560

Extibacter muris Lagkouvardos et al. 2017

28561

Flavonifractor plautii (Séguin 1928) Carlier et al. 2010

29136

Flavonifractor plautii (Séguin 1928) Carlier et al. 2010

29137

Flavonifractor plautii (Séguin 1928) Carlier et al. 2010

26117

Flintibacter butyricus corrig. Lagkouvardos et al. 2016

27579

Frisingicoccus caecimuris Lagkouvardos et al. 2016

28559

Intestinimonas butyriciproducens Kläring et al. 2013

26588

Irregularibacter muris Lagkouvardos et al. 2016

28593

Lactobacillus apodemi Osawa et al. 2006

16748

Lactobacillus johnsonii Fujisawa et al. 1992

100219

Lactobacillus murinus Hemme et al. 1982

28690

Lactobacillus murinus Hemme et al. 1982

28683

Lactobacillus murinus Hemme et al. 1982

100193

Lactobacillus murinus Hemme et al. 1982

100194

Lactobacillus paracasei Collins et al. 1989

28675

Lactobacillus reuteri Kandler et al. 1982

28673

Lactobacillus reuteri Kandler et al. 1982

100191

Lactobacillus reuteri Kandler et al. 1982

100192

Lactobacillus reuteri Kandler et al. 1982

32035

Lactobacillus rodentium Killer et al. 2014

24759

Lactobacillus taiwanensis Wang et al. 2009

28674

Lactobacillus taiwanensis Wang et al. 2009

100220

Longibaculum muris Lagkouvardos et al. 2017

29487

Longicatena caecimuris Lagkouvardos et al. 2016

29481

Longicatena caecimuris Lagkouvardos et al. 2016

29490

Muribaculum intestinale Lagkouvardos et al. 2016

28989

Muricomes intestini Lagkouvardos et al. 2016

29489

Murimonas intestini Kläring et al. 2015

26524

Murimonas intestini Kläring et al. 2015

27577

Murimonas intestini Kläring et al. 2015

27578

Oceanobacillus caeni Nam et al. 2008

28620

Paenibacillus lactis Scheldeman et al. 2004

28626

Paeniclostridium sordellii (Hall and Scott 1927) Sasi Jyothsna et al. 2016

29974

Parabacteroides distasonis (Eggerth and Gagnon 1933) Sakamoto and Benno 2006 emend. Hahnke et al. 2016

29491

Parabacteroides goldsteinii (Song et al. 2006) Sakamoto and Benno 2006

29187

Paraclostridium bifermentans (Weinberg and Seguin 1918) Sasi Jyothsna et al. 2016

29423

Parvibacter caecicola Clavel et al. 2013

22242

Pasteurella caecimuris Lagkouvardos et al. 2016

28627

Pasteurella caecimuris Lagkouvardos et al. 2016

100775

Pediococcus pentosaceus Mees 1934

28628

Proteus mirabilis Hauser 1885

28629

Pseudomonas sp.

28630

Staphylococcus lentus (Kloos et al. 1967) Schleifer et al. 1983

100111

Staphylococcus warneri Kloos and Schleifer 1975

28567

Staphylococcus xylosus Schleifer and Kloos 1975

28566

Stenotrophomonas maltophilia (Hugh 1981) Palleroni and Bradbury 1993

28631

Streptococcus danieliae Clavel et al. 2013

22233

Terrisporobacter sp.

29186

Turicimonas muris Lagkouvardos et al. 2017

26109