The Chicken intestinal Bacterial Collection
Although chickens are very important domestic animals, knowledge about their gut microbial communities is still scant. Studying microbes and their interactions with the immune system via a combination of cultivation and sequencing techniques open new avenues of research and applications to help addressing environmental issues and animal wellbeing. The present cultivation work allowed the establishment of a collection of 43 publicly available bacterial species spanning four phyla and 19 families, including the first cultured members of three novel genera and four novel species that were taxonomically described. Based on this collection, first steps were taken towards the development of synthetic bacterial communities usable as starter microbiota for newly hatched chickens.
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Species | DSM No. |
|---|---|
Alistipes onderdonkii Song et al. 2006 | |
Anaerotignum lactatifermentans (van der Wielen et al. 2002) Ueki et al. 2017 | |
"Bifidobacterium sp." | |
Bilophila wadsworthia Baron et al. 1990 | |
Claveliimonas monacensis Hisatomi et al. 2023 | |
Clostridium innocuum Smith and King 1962 | |
Clostridium paraputrificum (Bienstock 1906) Snyder 1936 | |
Clostridium tertium (Henry 1917) Bergey et al. 1923 | |
Collinsella massiliensis Padmanabhan et al. 2016 | |
Enterococcus cecorum (Devriese et al. 1983) Williams et al. 1989 | |
Enterococcus durans (ex Sherman and Wing 1937) Collins et al. 1984 | |
Enterococcus faecalis (Andrewes and Horder 1906) Schleifer and Kilpper-Bälz 1984 | |
Enterococcus faecium (Orla-Jensen 1919) Schleifer and Kilpper-Bälz 1984 | |
Enterococcus gallinarum (Bridge and Sneath 1982) Collins et al. 1984 | |
Enterococcus hirae Farrow and Collins 1985 | |
"Escherichia sp." | |
Flavonifractor plautii (Séguin 1928) Carlier et al. 2010 | |
Gallalistipes aquisgranensis | |
Gallibacter intestinalis | |
"Gemmiger sp." | |
Lactobacillus crispatus (Brygoo and Aladame 1953) Moore and Holdeman 1970 emend. Cato et al. 1983 | |
Lactobacillus gallinarum Fujisawa et al. 1992 | |
Lactobacillus johnsonii Fujisawa et al. 1992 | |
Lactobacillus kitasatonis Mukai et al. 2003 | |
Ligilactobacillus agilis (Weiss et al. 1982) Zheng et al. 2020 | |
Ligilactobacillus aviarius (Fujisawa et al. 1985) Zheng et al. 2020 | |
Ligilactobacillus saerimneri (Pedersen and Roos 2004) Zheng et al. 2020 | |
Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020 | |
Limosilactobacillus ingluviei (Baele et al. 2003) Zheng et al. 2020 | |
Limosilactobacillus mucosae (Roos et al. 2000) Zheng et al. 2020 | |
Limosilactobacillus oris (Farrow and Collins 1988) Zheng et al. 2020 | |
Limosilactobacillus pontis (Vogel et al. 1994) Zheng et al. 2020 | |
Limosilactobacillus reuteri (Kandler et al. 1982) Zheng et al. 2020 | |
Limosilactobacillus vaginalis (Embley et al. 1989) Zheng et al. 2020 | |
Megamonas funiformis Sakon et al. 2008 | |
Odoribacter splanchnicus (Werner et al. 1975) Hardham et al. 2008 emend. Hahnke et al. 2016 | |
Paenibacillus dendritiformis Tcherpakov et al. 1999 | |
Phocaeicola dorei (Bakir et al. 2006) García-López et al. 2020 | |
"Phocaeicola sp." | |
"Pseudoflavonifractor sp." | |
Rubneribacter badeniensis Danylec et al. 2018 | |
Ructibacterium gallinarum | |
Thermophilibacter gallinarum | |
Veillonella magna Kraatz and Taras 2008 |