Arabidopsis

Arabidopsis microbiota

The Arabidopsis-Microbiome project contains microbial strains isolated from leaves and roots of healthy Arabidopsis thaliana plants and deposited at the Leibniz Institute DSMZ in connection with the following publication:
Bai, Y., Müller, D. B., Srinivas, G., Garrido-Oter, R., Potthoff, E., Rott, M., Dombrowski, N., Münch, P. C., Spaepen, S., Remus-Emsermann, M., Hüttel, B., McHardy, A. C., Vorholt, J. A., Schulze-Lefert, P. (2015). Functional overlap of the Arabidopsis leaf and root microbiota. Nature 528 (7582): 364-9. https://doi.org/10.1038/nature16192

For detailed information on e.g. taxonomy, morphology, cultivation and metabolism of the strains listed below switch to our database BacDive.

Species	DSM No.
"Acidovorax sp."	102361
"Acidovorax sp."	102362
"Acidovorax sp."	102363
"Acidovorax sp."	102364
"Acidovorax sp."	102367
"Acidovorax sp."	102560
"Acidovorax sp."	102561
"Acidovorax sp."	102562
"Acidovorax sp."	102563
"Acidovorax sp."	102564
"Acidovorax sp."	102565
"Acidovorax sp."	102566
"Acinetobacter sp."	102368
"Acinetobacter sp."	102567
"Aeromicrobium sp."	102280
"Aeromicrobium sp."	102281
"Aeromicrobium sp."	102282
"Aeromicrobium sp."	102283
"Aeromicrobium sp."	102284
"Aeromicrobium sp."	102285
"Aeromicrobium sp."	102310
"Aeromicrobium sp."	102311
"Aeromicrobium sp."	102312
Afipia sp.	102369
Agreia sp.	102279
Agreia sp.	102313
Agreia sp.	102314
Agreia sp.	102315
"Agromyces sp."	102276
"Agromyces sp."	102277
"Agromyces sp."	102278
"Agromyces sp."	102323
"Altererythrobacter sp."	102370
"Aminobacter sp."	101952
Angustibacter sp.	102371
"Arthrobacter sp."	102320
"Arthrobacter sp."	102321
"Arthrobacter sp."	102322
"Arthrobacter sp."	102335
"Arthrobacter sp."	102336
"Arthrobacter sp."	102337
"Arthrobacter sp."	102338
"Arthrobacter sp."	102339
"Arthrobacter sp."	102340
"Arthrobacter sp."	102767
"Arthrobacter sp."	102768
"Arthrobacter sp."	102769
"Arthrobacter sp."	102770
"Aurantimonas sp."	102568
"Aurantimonas sp."	102569
"Aurantimonas sp."	102570
"Aurantimonas sp."	102571
"Aureimonas sp."	102572
"Bacillus sp."	102376
"Bacillus sp."	102377
"Bacillus sp."	102372
"Bacillus sp."	102373
"Bacillus sp."	102573
"Bordetella sp."	102378
"Bordetella sp."	102379
"Bosea sp."	102381
"Bosea sp."	102382
"Bosea sp."	102383
"Bosea sp."	102578
"Bradyrhizobium sp."	102579
"Bradyrhizobium sp."	102580
"Brevibacillus sp."	102581
"Brevundimonas sp."	102239
"Brevundimonas sp."	102384
"Brevundimonas sp."	102388
"Brevundimonas sp."	102582
"Brevundimonas sp."	102583
"Burkholderia sp."	102584
"Caulobacter sp."	102389
"Caulobacter sp."	102391
"Caulobacter sp."	102392
"Caulobacter sp."	102393
"Caulobacter sp."	102395
"Cellulomonas sp."	102398
"Cellulomonas sp."	102396
"Cellulomonas sp."	102397
"Cellulomonas sp."	102585
"Cellulomonas sp."	102586
"Chryseobacterium sp."	102587
"Chryseobacterium sp."	102588
"Chryseobacterium sp."	102589
"Chryseobacterium sp."	102590
"Chryseobacterium sp."	102591
"Chryseobacterium sp."	102592
"Cupriavidus sp."	102399
Curtobacterium flaccumfaciens (Hedges 1922) Collins and Jones 1984 emend. Osdaghi et al. 2024	102595
"Curtobacterium sp."	102593
"Curtobacterium sp."	102594
"Deinococcus sp."	102596
"Devosia sp."	102400
"Devosia sp."	102401
"Devosia sp."	102402
"Devosia sp."	102404
"Devosia sp."	102597
"Devosia sp."	102598
"Duganella sp."	102406
"Duganella sp."	102599
"Duganella sp."	102600
"Dyadobacter sp."	102601
"Ensifer sp."	102421
"Ensifer sp."	102422
"Ensifer sp."	102410
"Ensifer sp."	102411
"Ensifer sp."	102412
"Ensifer sp."	102413
"Ensifer sp."	102414
"Ensifer sp."	102415
"Ensifer sp."	102416
"Ensifer sp."	102417
"Ensifer sp."	102418
"Ensifer sp."	102419
"Ensifer sp."	102420
"Erwinia sp."	102602
"Exiguobacterium sp."	102603
"Exiguobacterium sp."	102604
"Flavobacterium sp."	102425
"Flavobacterium sp."	102426
"Flavobacterium sp."	102423
"Flavobacterium sp."	102424
"Flavobacterium sp."	102605
"Flavobacterium sp."	102606
"Frigoribacterium sp."	102607
"Frigoribacterium sp."	102608
"Frigoribacterium sp."	102609
"Frigoribacterium sp."	102610
"Frigoribacterium sp."	102611
"Frigoribacterium sp."	102612
"Frigoribacterium sp."	102613
"Frigoribacterium sp."	102693
"Frondihabitans sp."	102614
"Geodermatophilus sp."	102615
"Hoeflea sp."	102427
Hydrogenophaga sp.	102429
"Janibacter sp."	102774
"Kitasatospora sp."	102430
"Kitasatospora sp."	102431
"Knoellia sp."	102775
"Leifsonia sp."	102432
"Leifsonia sp."	102433
"Leifsonia sp."	102434
"Leifsonia sp."	102435
"Leifsonia sp."	102616
"Leifsonia sp."	102617
"Leifsonia sp."	102618
"Lysobacter sp."	102441
"Lysobacter sp."	102442
"Lysobacter sp."	102443
"Lysobacter sp."	102444
"Lysobacter sp."	102436
"Lysobacter sp."	102437
"Lysobacter sp."	102438
"Lysobacter sp."	102439
"Lysobacter sp."	102440
"Marmoricola sp."	102619
"Massilia sp."	102446
"Massilia sp."	102447
"Massilia sp."	102448
"Massilia sp."	102409
"Massilia sp."	102620
"Mesorhizobium sp."	102449
"Mesorhizobium sp."	102450
"Mesorhizobium sp."	102451
"Mesorhizobium sp."	102452
"Mesorhizobium sp."	102453
"Mesorhizobium sp."	102454
Methylibium sp.	102455
"Methylobacterium sp."	102621
"Methylobacterium sp."	102622
"Methylobacterium sp."	102623
"Methylobacterium sp."	102624
"Methylobacterium sp."	102625
"Methylobacterium sp."	102626
"Methylobacterium sp."	102627
"Methylobacterium sp."	102628
"Methylobacterium sp."	102629
"Methylobacterium sp."	102630
"Methylobacterium sp."	102631
"Methylobacterium sp."	102632
"Methylobacterium sp."	102633
"Methylobacterium sp."	102634
"Methylobacterium sp."	102635
"Methylobacterium sp."	102636
"Methylobacterium sp."	102637
"Methylobacterium sp."	102638
"Methylobacterium sp."	102639
"Methylobacterium sp."	102640
"Methylobacterium sp."	102641
"Methylobacterium sp."	102642
"Methylobacterium sp."	102643
"Methylobacterium sp."	102644
"Methylobacterium sp."	102646
"Methylobacterium sp."	102647
"Methylobacterium sp."	102649
"Methylobacterium sp."	102650
"Methylobacterium sp."	102651
"Methylobacterium sp."	102652
"Methylophilus sp."	102653
"Methylophilus sp."	102654
"Methylophilus sp."	102655
"Microbacterium sp."	102458
"Microbacterium sp."	102459
"Microbacterium sp."	102460
"Microbacterium sp."	102461
"Microbacterium sp."	102462
"Microbacterium sp."	102463
"Microbacterium sp."	102464
"Microbacterium sp."	102465
"Microbacterium sp."	102657
"Microbacterium sp."	102658
"Microbacterium sp."	102659
"Microbacterium sp."	102660
"Microbacterium sp."	102661
"Microbacterium sp."	102662
"Microbacterium sp."	102663
"Microbacterium sp."	102664
"Microbacterium sp."	102665
"Microbacterium sp."	102666
"Modestobacter sp."	102577
"Mycobacterium sp."	102466
"Mycobacterium sp."	102467
"Mycobacterium sp."	102468
"Mycobacterium sp."	102776
"Nitratireductor sp."	102469
"Nocardia sp."	102470
"Nocardioides sp."	102480
"Nocardioides sp."	102471
"Nocardioides sp."	102472
"Nocardioides sp."	102473
"Nocardioides sp."	102474
"Nocardioides sp."	102475
"Nocardioides sp."	102476
"Nocardioides sp."	102477
"Nocardioides sp."	102478
"Nocardioides sp."	102479
"Nocardioides sp."	102667
"Nocardioides sp."	102669
"Nocardioides sp."	102777
"Nocardioides sp."	102778
"Nocardioides sp."	102779
"Nocardioides sp."	102780
"Nocardioides sp."	102781
"Noviherbaspirillum sp."	102481
"Novosphingobium sp."	102670
"Oerskovia sp."	102484
"Oerskovia sp."	102483
"Paenibacillus sp."	102488
"Paenibacillus sp."	102485
"Paenibacillus sp."	102486
"Paenibacillus sp."	102487
"Paenibacillus sp."	102671
"Paenibacillus sp."	102782
"Paenibacillus sp."	102783
"Paenibacillus sp."	102784
"Paenibacillus sp."	102785
"Paenibacillus sp."	102786
"Pedobacter sp."	102672
"Pedobacter sp."	102673
"Pedobacter sp."	102674
"Pedobacter sp."	102675
"Pedobacter sp."	102676
"Pedobacter sp."	102677
"Pedobacter sp."	102678
"Pelomonas sp."	102492
Peribacillus butanolivorans (Kuisiene et al. 2008) Patel and Gupta 2020	102576
Peribacillus butanolivorans (Kuisiene et al. 2008) Patel and Gupta 2020	102773
Peribacillus frigoritolerans Montecillo & Bae 2022	102772
"Phenylobacterium sp."	102497
"Phenylobacterium sp."	102496
"Phenylobacterium sp."	102494
"Phenylobacterium sp."	102495
"Phycicoccus sp."	102498
"Phycicoccus sp."	102499
"Phycicoccus sp."	102787
"Phycicoccus sp."	102788
"Phycicoccus sp."	102789
Phycicola sp.	102500
"Plantibacter sp."	102679
"Plantibacter sp."	102680
"Plantibacter sp."	102681
Priestia megaterium (de Bary 1884) Gupta et al. 2020	102374
Priestia megaterium (de Bary 1884) Gupta et al. 2020	102375
Priestia megaterium (de Bary 1884) Gupta et al. 2020	102574
Priestia megaterium (de Bary 1884) Gupta et al. 2020	102771
Pseudoduganella sp.	102405
"Pseudolabrys sp."	102501
"Pseudomonas sp."	102508
"Pseudomonas sp."	102507
"Pseudomonas sp."	102502
"Pseudomonas sp."	102503
"Pseudomonas sp."	102504
"Pseudomonas sp."	102505
"Pseudomonas sp."	102506
"Pseudomonas sp."	102682
"Pseudomonas sp."	102683
"Pseudomonas sp."	102684
"Pseudomonas sp."	102685
"Pseudomonas sp."	102686
"Pseudomonas sp."	102687
"Pseudomonas sp."	102688
"Pseudomonas sp."	102689
"Pseudomonas sp."	102690
"Pseudorhodoferax sp."	102691
"Pseudoxanthomonas sp."	102509
"Pseudoxanthomonas sp."	102510
"Rahnella sp."	102721
"Rathayibacter sp."	102694
"Rathayibacter sp."	102695
"Rathayibacter sp."	102696
"Rathayibacter sp."	102697
"Rathayibacter sp."	102698
"Rhizobacter sp."	102514
"Rhizobacter sp."	102515
"Rhizobium sp."	102530
"Rhizobium sp."	102529
"Rhizobium sp."	102516
"Rhizobium sp."	102517
"Rhizobium sp."	102519
"Rhizobium sp."	102520
"Rhizobium sp."	102521
"Rhizobium sp."	102522
"Rhizobium sp."	102523
"Rhizobium sp."	102524
"Rhizobium sp."	102525
"Rhizobium sp."	102526
"Rhizobium sp."	102527
"Rhizobium sp."	102528
"Rhizobium sp."	102699
"Rhizobium sp."	102700
"Rhizobium sp."	102701
"Rhizobium sp."	102702
"Rhizobium sp."	102703
"Rhizobium sp."	102704
"Rhizobium sp."	102705
"Rhizobium sp."	102706
"Rhizobium sp."	102707
"Rhizobium sp."	102708
"Rhizobium sp."	102709
"Rhizobium sp."	102710
"Rhizobium sp."	102711
"Rhizobium sp."	102712
"Rhizobium sp."	102713
"Rhodanobacter sp."	102531
"Rhodanobacter sp."	102532
"Rhodanobacter sp."	102533
"Rhodanobacter sp."	102534
"Rhodanobacter sp."	102790
"Rhodanobacter sp."	102791
"Rhodococcus sp."	102714
"Rhodococcus sp."	102715
"Rhodococcus sp."	102716
"Rhodococcus sp."	102717
"Rhodococcus sp."	102718
"Rhodococcus sp."	102719
"Rossellomorea sp."	102575
"Sanguibacter sp."	102720
"Serratia sp."	102722
"Sphingobium sp."	102723
"Sphingomonas sp."	102538
"Sphingomonas sp."	102539
"Sphingomonas sp."	102535
"Sphingomonas sp."	102536
"Sphingomonas sp."	102537
"Sphingomonas sp."	102724
"Sphingomonas sp."	102725
"Sphingomonas sp."	102726
"Sphingomonas sp."	102727
"Sphingomonas sp."	102728
"Sphingomonas sp."	102729
"Sphingomonas sp."	102730
"Sphingomonas sp."	102731
"Sphingomonas sp."	102732
"Sphingomonas sp."	102733
"Sphingomonas sp."	102734
"Sphingomonas sp."	102735
"Sphingomonas sp."	102736
"Sphingomonas sp."	102737
"Sphingomonas sp."	102738
"Sphingomonas sp."	102739
"Sphingomonas sp."	102740
"Sphingomonas sp."	102741
"Sphingomonas sp."	102742
"Sphingomonas sp."	102743
"Sphingomonas sp."	102744
"Sphingomonas sp."	102745
"Sphingomonas sp."	102746
"Sphingomonas sp."	102747
"Sphingomonas sp."	102748
"Sphingomonas sp."	102749
"Sphingomonas sp."	102750
"Sphingomonas sp."	102751
"Sphingomonas sp."	102752
"Sphingomonas sp."	102753
"Sphingomonas sp."	102754
"Sphingomonas sp."	102755
"Sphingomonas sp."	102756
"Sphingomonas sp."	102757
"Sphingomonas sp."	102758
"Sphingomonas sp."	102759
"Sphingomonas sp."	102760
"Sphingopyxis sp."	102540
"Sphingopyxis sp."	102541
"Sphingopyxis sp."	102542
"Stenotrophomonas sp."	102761
Streptomyces sp.	102543
Streptomyces sp.	102544
Streptomyces sp.	102545
Streptomyces sp.	102546
Streptomyces sp.	102547
Streptomyces sp.	102548
Streptomyces sp.	102549
Streptomyces sp.	102550
Streptomyces sp.	102551
Streptomyces sp.	102552
"Terrabacter sp."	102554
"Terrabacter sp."	102553
"Terrabacter sp."	102792
"Terrabacter sp."	102793
"Tetrasphaera sp."	102794
"Variovorax sp."	102555
"Variovorax sp."	102556
"Variovorax sp."	102557
"Variovorax sp."	102558
"Variovorax sp."	102762
"Variovorax sp."	102763
"Williamsia sp."	102764
Xanthomonas hortorum Vauterin et al. 1995	102766
Xanthomonas vesicatoria (ex Doidge 1920) Vauterin et al. 1995	102765
"Yonghaparkia sp."	102559
"Yonghaparkia sp."	102795