miBC: The mouse intestinal Bacterial Collection

This collection includes all cultivable bacterial strains isolated from the intestine of mice (Mus musculus) that are publicly available to date. The resource was built to increase our knowledge of the cultivable diversity of mouse gut microbiomes and to support scientists for colonization experiments in germfree mice by providing a pool of usable strains.

miBC is an initiative from the RTWH Aachen (Prof. Thomas Clavel) and the Leibniz-Institut DSMZ-German Collection of Microorganisms and Cell Cultures. It is supported by the priority program SPP-1656 of the German Research Foundation (DFG) and by the German Federal Ministry of Science and Education through the German Center of Infection Research (DZIF).

The list below gives detailed information on the strains currently included into the collection (the information is accessible via links through DSM No.).

For further information see the following publication:

http://www.nature.com/articles/nmicrobiol2016131

Species

DSM No.

Acetatifactor  muris Pfeiffer et al. 2013

23669

Actinomyces  bowdenii Pascual et al. 1999

28589

Acutalibacter  muris Lagkouvardos et al. 2016

26090

Adlercreutzia  caecicola (Clavel et al. 2013) Nouioui et al. 2018

22242

Adlercreutzia  caecimuris (Clavel et al. 2010) Nouioui et al. 2018

21839

Adlercreutzia  mucosicola (Clavel et al. 2009) Nouioui et al. 2018

19490

Adlercreutzia  muris (Lagkouvardos et al. 2016) Nouioui et al. 2018

29508

Akkermansia  muciniphila Derrien et al. 2004 emend. Hahnke et al. 2016

26127

Alistipes  sp.

27924

Anaerofustis  stercorihominis Finegold et al. 2004

28733

Anaerosalibacter  sp.

29482

Anaerotruncus  colihominis Lawson et al. 2004

28734

Bacillus  licheniformis (Weigmann 1898) Chester 1901

28591

Bacillus  sp.

28590

Bacillus  subtilis (Ehrenberg 1835) Cohn 1872

28592

Bacillus  thermoamylovorans Combet-Blanc et al. 1995 emend. Coorevits et al. 2011

28625

Bacteroides  acidifaciens Miyamoto and Itoh 2000

100502

Bacteroides  caecimuris Lagkouvardos et al. 2016

26085

Bacteroides  sartorii Clavel et al. 2010 emend. Sakamoto and Ohkuma 2012

21941

Bacteroides  vulgatus Eggerth and Gagnon 1933 emend. Hahnke et al. 2016

28735

Bacteroides  xylanisolvens Chassard et al. 2008

100015

Bifidobacterium  animalis (Mitsuoka 1969) Scardovi and Trovatelli 1974 emend. Masco et al. 2004

28736

Bifidobacterium  animalis (Mitsuoka 1969) Scardovi and Trovatelli 1974 emend. Masco et al. 2004

26074

Blautia  caecimuris Lagkouvardos et al. 2016

29492

Blautia  coccoides (Kaneuchi et al. 1976) Liu et al. 2008

28737

Blautia  coccoides (Kaneuchi et al. 1976) Liu et al. 2008

29138

Blautia  coccoides (Kaneuchi et al. 1976) Liu et al. 2008

26115

Cellulosimicrobium  cellulans (Metcalfe and Brown 1957) Schumann et al. 2001

29131

Clostridioides  mangenotii (Prévot and Zimmès-Chaverou 1947) Lawson et al. 2016

29133

Clostridium  bolteae Song et al. 2003

29485

Clostridium  clostridioforme corrig. (Burri and Ankersmit 1906) Kaneuchi et al. 1976

26114

Clostridium  cochlearium (Douglas et al. 1919) Bergey et al. 1923

29358

Clostridium  cocleatum Kaneuchi et al. 1979

1551

Clostridium  innocuum Smith and King 1962

29132

Clostridium  innocuum Smith and King 1962

26113

Clostridium  perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937

29991

Clostridium  ramosum (Veillon and Zuber 1898) Holdeman et al. 1971

29355

Clostridium  ramosum (Veillon and Zuber 1898) Holdeman et al. 1971

29357

Clostridium  sp.

29420

Clostridium  sp.

100503

Clostridium  sporogenes (Metchnikoff 1908) Bergey et al. 1923

29422

Clostridium  symbiosum (Stevens 1956) Kaneuchi et al. 1976

29356

Cuneatibacter  caecimuris Lagkouvardos et al. 2016

29486

Duncaniella  muris Lagkouvardos et al. 2019

103720

Enterococcus  faecalis (Andrewes and Horder 1906) Schleifer and Kilpper-Bälz 1984

29488

Enterococcus  faecalis (Andrewes and Horder 1906) Schleifer and Kilpper-Bälz 1984

32036

Enterococcus  gallinarum (Bridge and Sneath 1982) Collins et al. 1984

28564

Enterococcus  gallinarum (Bridge and Sneath 1982) Collins et al. 1984

28565

Enterococcus  gallinarum (Bridge and Sneath 1982) Collins et al. 1984

100110

Enterococcus  hirae Farrow and Collins 1985

28619

Escherichia  coli (Migula 1895) Castellani and Chalmers 1919

28618

Extibacter  muris Lagkouvardos et al. 2017

28560

Extibacter  muris Lagkouvardos et al. 2017

28561

Flavonifractor  plautii (Séguin 1928) Carlier et al. 2010

29136

Flavonifractor  plautii (Séguin 1928) Carlier et al. 2010

29137

Flavonifractor  plautii (Séguin 1928) Carlier et al. 2010

26117

Flintibacter  butyricus corrig. Lagkouvardos et al. 2016

27579

Frisingicoccus  caecimuris Lagkouvardos et al. 2016

28559

Intestinimonas  butyriciproducens Kläring et al. 2013

26588

Irregularibacter  muris Lagkouvardos et al. 2016

28593

Lactobacillus  apodemi Osawa et al. 2006

16748

Lactobacillus  johnsonii Fujisawa et al. 1992

100219

Lactobacillus  murinus Hemme et al. 1982

28690

Lactobacillus  murinus Hemme et al. 1982

28683

Lactobacillus  murinus Hemme et al. 1982

100193

Lactobacillus  murinus Hemme et al. 1982

100194

Lactobacillus  paracasei Collins et al. 1989

28675

Lactobacillus  reuteri Kandler et al. 1982

28673

Lactobacillus  reuteri Kandler et al. 1982

100191

Lactobacillus  reuteri Kandler et al. 1982

100192

Lactobacillus  reuteri Kandler et al. 1982

32035

Lactobacillus  rodentium Killer et al. 2014

24759

Lactobacillus  taiwanensis Wang et al. 2009

28674

Lactobacillus  taiwanensis Wang et al. 2009

100220

Longibaculum  muris Lagkouvardos et al. 2017

29487

Longicatena  caecimuris Lagkouvardos et al. 2016

29481

Longicatena  caecimuris Lagkouvardos et al. 2016

29490

Muribaculum  intestinale Lagkouvardos et al. 2016

28989

Muricomes  intestini Lagkouvardos et al. 2016

29489

Murimonas  intestini Kläring et al. 2015

26524

Murimonas  intestini Kläring et al. 2015

27577

Murimonas  intestini Kläring et al. 2015

27578

Oceanobacillus  caeni Nam et al. 2008

28620

Paenibacillus  lactis Scheldeman et al. 2004

28626

Paeniclostridium  sordellii (Hall and Scott 1927) Sasi Jyothsna et al. 2016

29974

Parabacteroides  distasonis (Eggerth and Gagnon 1933) Sakamoto and Benno 2006 emend. Hahnke et al. 2016

29491

Parabacteroides  goldsteinii (Song et al. 2006) Sakamoto and Benno 2006

29187

Paraclostridium  bifermentans (Weinberg and Séguin 1918) Sasi Jyothsna et al. 2016 emend. Kutsuna et al. 2018

29423

Paramuribaculum  intestinale Lagkouvardos et al. 2019

100749

Paramuribaculum  intestinale Lagkouvardos et al. 2019

100764

Pasteurella  caecimuris Lagkouvardos et al. 2016

28627

Pasteurella  caecimuris Lagkouvardos et al. 2016

100775

Pediococcus  pentosaceus Mees 1934

28628

Proteus  mirabilis Hauser 1885

28629

Pseudomonas  sp.

28630

Staphylococcus  lentus (Kloos et al. 1976) Schleifer et al. 1983

100111

Staphylococcus  warneri Kloos and Schleifer 1975

28567

Staphylococcus  xylosus Schleifer and Kloos 1975

28566

Stenotrophomonas  maltophilia (Hugh 1981) Palleroni and Bradbury 1993

28631

Streptococcus  danieliae Clavel et al. 2013

22233

Terrisporobacter  sp.

29186

Turicimonas  muris Lagkouvardos et al. 2017

26109