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Publikationsliste der DSMZ

Hier finden Sie einen Überblick über die wissenschaftlichen Publikationen unserer Mitarbeiter und Mitarbeiterinnen.

Publikationen
2017 Steglich,M., Nübel,U. ( 2017 ) The challenge of detecting indels in bacterial genomes from short-read sequencing data J. Biotechnol. Epub ahead of print

2017 Nagel,S., Pommerenke,C., Scherr,M., Meyer,C., Kaufmann,M., Battmer,K., MacLeod,R.A., Drexler,H.G. ( 2017 ) NKL homeobox gene activities in hematopoietic stem cells, T-cell development and T-cell leukemia PLoS One 12 (2) :e0171164.

https://www.ncbi.nlm.nih.gov/pubmed/28151996
2017 Drexler,H.G., Dirks,W.G., MacLeod,R.A., Uphoff,C.C. ( 2017 ) False and mycoplasma-contaminated leukemia-lymphoma cell lines: time for a reappraisal Int J Cancer 140 (5) :1209-1214.

https://www.ncbi.nlm.nih.gov/pubmed/27870004
2017 Palau,A., Mallo,M., Palomo,L., Rodriguez-Hernandez,I., Diesch,J., Campos,D., Granada,I., Junca,J., Drexler,H.G., Sole,F., Buschbeck,M. ( 2017 ) Immunophenotypic, cytogenetic, and mutational characterization of cell lines derived from myelodysplastic syndrome patients after progression to acute myeloid leukemia Genes Chromosomes Cancer 56 (3) :243-252.

https://www.ncbi.nlm.nih.gov/pubmed/27750403
2017 MacLeod,R.A., Kaufmann,M.E., Drexler,H.G. ( 2017 ) Cytogenetic Harvesting of Cancer Cells and Cell Lines Methods Mol Biol 1541 :43-58.

https://www.ncbi.nlm.nih.gov/pubmed/27910013
2017 Shang,Y., Sikorski,J., Bonkowski,M., Fiore-Donno,A.-M., Kandeler,E., Marhan,S., Boeddinghaus,R.S., Solly,E.F., Schrumpf,M., Schöning,I., Wubet,T., Buscot,F., Overmann,J. ( 2017 ) Inferring interactions in complex microbial communities from nucleotide sequence data and environmental parameters PLOS ONE 12 (3) :e0173765.

http://dx.doi.org/10.1371%2Fjournal.pone.0173765
2017 Menzel,W., Winter,S. ( 2017 ) First report of Mint vein banding-associated virus infecting Mentha × gracilis in Germany New Disease Reports 35 :9.

2017 Roenhorst,J.W., Lacomme,C., Nisbet,C., Leichtfried,T., Menzel,W., Winter,S., vanderVlug,R.A.A. ( 2017 ) Euphresco project VirusCollect - fulfilling the need for a common collection of plant viruses and viroids for reference EPPO Bulletin :1-7.

2017 Knierim,D., Menzel,W., Winter,S. ( 2017 ) Analysis of the complete genome sequence of euphorbia ringspot virus, an atypical member of the genus Potyvirus Archives of Virology 162 :291-293.

2017 Markowetz,F. ( 2017 ) All biology is computational biology PLOS Biology 15 (3) :e2002050.

http://dx.doi.org/10.1371%2Fjournal.pbio.2002050
2017 Starnawski,P., Bataillon,T., Ettema,T.J.G., Jochum,L.M., Schreiber,L., Chen,X., Lever,M.A., Polz,M.F., Jørgensen,B.B., Schramm,A., Kjeldsen,K.U. ( 2017 ) Microbial community assembly and evolution in subseafloor sediment Proceedings of the National Academy of Sciences 114 (11) :2940-2945.

http://www.pnas.org/content/114/11/2940.abstract
2017 Ruf,A., Kanawati,B., Hertkorn,N., Yin,Q.-Z., Moritz,F., Harir,M., Lucio,M., Michalke,B., Wimpenny,J., Shilobreeva,S., Bronsky,B., Saraykin,V., Gabelica,Z., Gougeon,R.D., Quirico,E., Ralew,S., Jakubowski,T., Haack,H., Gonsior,M., Jenniskens,P., Hinman,N.W., Schmitt-Kopplin,P. ( 2017 ) Previously unknown class of metalorganic compounds revealed in meteorites Proceedings of the National Academy of Sciences 114 (11) :2819-2824.

http://www.pnas.org/content/114/11/2819.abstract
2016 Nübel,U. ( 2016 ) Emergence and spread of antimicrobial resistance: recent insights from bacterial population genomics Current Topics in Microbiology and Immunology 398 :35-53.

http://dx.doi.org/10.1007/82_2016_505
2016 Becker,L., Steglich,M., Fuchs,S., Werner,G., Nübel,U. ( 2016 ) Comparison of six commercial kits to extract bacterial chromosome and plasmid DNA for MiSeq sequencing Sci Rep 6 :28063.

http://www.ncbi.nlm.nih.gov/pubmed/27312200
2016 Jeske,O., Surup,F., Ketteniß,M., Rast,P., Förster,B., Jogler,M., Wink,J., Jogler,C. ( 2016 ) Developing Techniques for the Utilization of Planctomycetes As Producers of Bioactive Molecules Frontiers in Microbiology 7 (1242)

http://journal.frontiersin.org/article/10.3389/fmicb.2016.01242
2016 Pesch,T., Schuhwerk,H., Wyrsch,P., Immel,T., Dirks,W., Burkle,A., Huhn,T., Beneke,S. ( 2016 ) Differential cytotoxicity induced by the Titanium(IV)Salan complex Tc52 in G2-phase independent of DNA damage BMC Cancer 16 :469.

https://www.ncbi.nlm.nih.gov/pubmed/27412346
2016 Nardone,R.M., MacLeod,R.A., Capes-Davis,A. ( 2016 ) Cancer: Authenticate new xenograft models Nature 532 (7599) :313.

https://www.ncbi.nlm.nih.gov/pubmed/27127813
2016 Mansouri,L., Noerenberg,D., Young,E., Mylonas,E., Abdulla,M., Frick,M., Asmar,F., Ljungstrom,V., Schneider,M., Yoshida,K., Skaftason,A., Pandzic,T., Gonzalez,B., Tasidou,A., Waldhueter,N., Rivas-Delgado,A., Angelopoulou,M., Ziepert,M., Arends,C.M., Couronne,L., Lenze,D., Baldus,C.D., Bastard,C., Okosun,J., Fitzgibbon,J., Dorken,B., Drexler,H.G., Roos-Weil,D., Schmitt,C.A., Munch-Petersen,H.D., Zenz,T., Hansmann,M.L., Strefford,J.C., Enblad,G., Bernard,O.A., Ralfkiaer,E., Erlanson,M., Korkolopoulou,P., Hultdin,M., Papadaki,T., Gronbaek,K., Lopez-Guillermo,A., Ogawa,S., Kuppers,R., Stamatopoulos,K., Stavroyianni,N., Kanellis,G., Rosenwald,A., Campo,E., Amini,R.M., Ott,G., Vassilakopoulos,T.P., Hummel,M., Rosenquist,R., Damm,F. ( 2016 ) Frequent NFKBIE deletions are associated with poor outcome in primary mediastinal B-cell lymphoma Blood 128 (23) :2666-2670.

https://www.ncbi.nlm.nih.gov/pubmed/27670424
2016 Quentmeier,H., Drexler,H.G., Hauer,V., MacLeod,R.A., Pommerenke,C., Uphoff,C.C., Zaborski,M., Berglund,M., Enblad,G., Amini,R.M. ( 2016 ) Diffuse Large B Cell Lymphoma Cell Line U-2946: Model for MCL1 Inhibitor Testing PLoS One 11 (12) :e0167599.

http://www.ncbi.nlm.nih.gov/pubmed/27907212
2016 Hezaveh,K., Kloetgen,A., Bernhart,S.H., Mahapatra,K.D., Lenze,D., Richter,J., Haake,A., Bergmann,A.K., Brors,B., Burkhardt,B., Claviez,A., Drexler,H.G., Eils,R., Haas,S., Hoffmann,S., Karsch,D., Klapper,W., Kleinheinz,K., Korbel,J., Kretzmer,H., Kreuz,M., Kuppers,R., Lawerenz,C., Leich,E., Loeffler,M., Mantovani-Loeffler,L., Lopez,C., McHardy,A.C., Moller,P., Rohde,M., Rosenstiel,P., Rosenwald,A., Schilhabel,M., Schlesner,M., Scholz,I., Stadler,P.F., Stilgenbauer,S., Sungalee,S., Szczepanowski,M., Trumper,L., Weniger,M.A., Siebert,R., Borkhardt,A., Hummel,M., Hoell,J.I., Project,I.M.-S. ( 2016 ) Alterations of microRNA and microRNA-regulated messenger RNA expression in germinal center B-cell lymphomas determined by integrative sequencing analysis Haematologica 101 (11) :1380-1389.

http://www.ncbi.nlm.nih.gov/pubmed/27390358
2016 Palmi,C., Savino,A.M., Silvestri,D., Bronzini,I., Cario,G., Paganin,M., Buldini,B., Galbiati,M., Muckenthaler,M.U., Bugarin,C., Mina,P.D., Nagel,S., Barisone,E., Casale,F., Locatelli,F., Nigro,L.L., Micalizzi,C., Parasole,R., Pession,A., Putti,M.C., Santoro,N., Testi,A.M., Ziino,O., Kulozik,A.E., Zimmermann,M., Schrappe,M., Villa,A., Gaipa,G., Basso,G., Biondi,A., Valsecchi,M.G., Stanulla,M., Conter,V., Kronnie,G.T., Cazzaniga,G. ( 2016 ) CRLF2 over-expression is a poor prognostic marker in children with high risk T-cell acute lymphoblastic leukemia Oncotarget

http://www.ncbi.nlm.nih.gov/pubmed/27449287
2016 Quentmeier,H., Pommerenke,C., Ammerpohl,O., Geffers,R., Hauer,V., MacLeod,R.A., Nagel,S., Romani,J., Rosati,E., Rosen,A., Uphoff,C.C., Zaborski,M., Drexler,H.G. ( 2016 ) Subclones in B-lymphoma cell lines: isogenic models for the study of gene regulation Oncotarget

http://www.ncbi.nlm.nih.gov/pubmed/27566572
2016 Kadin,M.E., Deva,A., Xu,H., Morgan,J., Khare,P., MacLeod,R.A., VanNatta,B.W., Adams,W.P.,Jr., Brody,G.S., Epstein,A.L. ( 2016 ) Biomarkers Provide Clues to Early Events in the Pathogenesis of Breast Implant-Associated Anaplastic Large Cell Lymphoma Aesthet Surg J 36 (7) :773-81.

http://www.ncbi.nlm.nih.gov/pubmed/26979456
2016 Nagel,S., Pommerenke,C., Meyer,C., Kaufmann,M., Drexler,H.G., MacLeod,R.A. ( 2016 ) Deregulation of polycomb repressor complex 1 modifier AUTS2 in T-cell leukemia Oncotarget

http://www.ncbi.nlm.nih.gov/pubmed/27322685
2016 Ehrentraut,S., Schneider,B., Nagel,S., Pommerenke,C., Quentmeier,H., Geffers,R., Feist,M., Kaufmann,M., Meyer,C., Kadin,M.E., Drexler,H.G., MacLeod,R.A. ( 2016 ) Th17 cytokine differentiation and loss of plasticity after SOCS1 inactivation in a cutaneous T-cell lymphoma Oncotarget

http://www.ncbi.nlm.nih.gov/pubmed/27144517
2016 Pommerenke,C., Hauer,V., Zaborski,M., MacLeod,R.A., Nagel,S., Amini,R.M., Berglund,M., Geffers,R., Drexler,H.G., Quentmeier,H. ( 2016 ) Chromosome 11q23 aberrations activating FOXR1 in B-cell lymphoma Blood Cancer J 6 :e433.

http://www.ncbi.nlm.nih.gov/pubmed/27284737
2016 Pommerenke,C., Geffers,R., Bunk,B., Bhuju,S., Eberth,S., Drexler,H.G., Quentmeier,H. ( 2016 ) Enhanced whole exome sequencing by higher DNA insert lengths BMC Genomics 17 (1) :399.

http://www.ncbi.nlm.nih.gov/pubmed/27225215
2016 Drexler,H.G., Eberth,S., Nagel,S., MacLeod,R.A. ( 2016 ) Malignant hematopoietic cell lines: in vitro models for double-hit B-cell lymphomas Leuk Lymphoma 57 (5) :1015-20.

http://www.ncbi.nlm.nih.gov/pubmed/26727417
2016 Veith,N., Ziehr,H., MacLeod,R.A., Reamon-Buettner,S.M. ( 2016 ) Mechanisms underlying epigenetic and transcriptional heterogeneity in Chinese hamster ovary (CHO) cell lines BMC Biotechnol 16 (1) :6.

http://www.ncbi.nlm.nih.gov/pubmed/26800878
2016 Okosun,J., Wolfson,R.L., Wang,J., Araf,S., Wilkins,L., Castellano,B.M., Escudero-Ibarz,L., AlSeraihi,A.F., Richter,J., Bernhart,S.H., Efeyan,A., Iqbal,S., Matthews,J., Clear,A., Guerra-Assuncao,J.A., Bodor,C., Quentmeier,H., Mansbridge,C., Johnson,P., Davies,A., Strefford,J.C., Packham,G., Barrans,S., Jack,A., Du,M.Q., Calaminici,M., Lister,T.A., Auer,R., Montoto,S., Gribben,J.G., Siebert,R., Chelala,C., Zoncu,R., Sabatini,D.M., Fitzgibbon,J. ( 2016 ) Recurrent mTORC1-activating RRAGC mutations in follicular lymphoma Nat Genet 48 (2) :183-8.

http://www.ncbi.nlm.nih.gov/pubmed/26691987
2016 Doijad,S., Imirzalioglu,C., Yao,Y., Pati,N.B., Falgenhauer,L., Hain,T., Foesel,B.U., Abt,B., Overmann,J., Mirambo,M.M., Mshana,S.E., Chakraborty,T. ( 2016 ) Enterobacter bugandensis sp. nov., isolated from neonatal blood International Journal of Systematic and Evolutionary Microbiology 66 (2) :968-974.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000821
2016 Foesel,B.U., Geppert,A., Rohde,M., Overmann,J. ( 2016 ) Parviterribacter kavangonensis gen. nov., sp. nov. and Parviterribacter multiflagellatus sp. nov., novel members of Parviterribacteraceae fam. nov. within the order Solirubrobacterales, and emended descriptions of the classes Thermoleophilia and Rubrobacteria and their orders and families International Journal of Systematic and Evolutionary Microbiology 66 (2) :652-665.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000770
2016 Foesel,B.U., Mayer,S., Luckner,M., Wanner,G., Rohde,M., Overmann,J. ( 2016 ) Occallatibacter riparius gen. nov., sp. nov. and Occallatibacter savannae sp. nov., acidobacteria isolated from Namibian soils, and emended description of the family Acidobacteriaceae International Journal of Systematic and Evolutionary Microbiology 66 (1) :219-229.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000700
2016 Huber,K.J., Geppert,A.M., Wanner,G., Fosel,B.U., Wust,P.K., Overmann,J. ( 2016 ) Vicinamibacter silvestris - The first representative of the globally widespread subdivision 6 Acidobacteria isolated from subtropical savannah soil Int J Syst Evol Microbiol

2016 Doijad,S., Imirzalioglu,C., Yao,Y., Pati,N.B., Falgenhauer,L., Hain,T., Foesel,B.U., Abt,B., Overmann,J., Mirambo,M.M., Mshana,S.E., Chakraborty,T. ( 2016 ) Enterobacter bugandensis sp. nov., isolated from neonatal blood International Journal of Systematic and Evolutionary Microbiology 66 (2) :968-974.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000821
2016 Lagkouvardos,I., Pukall,R., Abt,B., Foesel,B.U., Meier-Kolthoff,J.P., Kumar,N., Bresciani,A., Martínez,I., Just,S., Ziegler,C., Brugiroux,S., Garzetti,D., Wenning,M., Bui,T.P.N., Wang,J., Hugenholtz,F., Plugge,C.M., Peterson,D.A., Hornef,M.W., Baines,J.F., Smidt,H., Walter,J., Kristiansen,K., Nielsen,H.B., Haller,D., Overmann,J., Stecher,B., Clavel,T. ( 2016 ) The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota Nature Microbiology 1 :16131.

http://dx.doi.org/10.1038/nmicrobiol.2016.131
2016 Foesel,B.U., Mayer,S., Luckner,M., Wanner,G., Rohde,M., Overmann,J. ( 2016 ) Occallatibacter riparius gen. nov., sp. nov. and Occallatibacter savannae sp. nov., acidobacteria isolated from Namibian soils, and emended description of the family Acidobacteriaceae International Journal of Systematic and Evolutionary Microbiology 66 (1) :219-229.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000700
2016 Foesel,B.U., Geppert,A., Rohde,M., Overmann,J. ( 2016 ) Parviterribacter kavangonensis gen. nov., sp. nov. and Parviterribacter multiflagellatus sp. nov., novel members of Parviterribacteraceae fam. nov. within the order Solirubrobacterales, and emended descriptions of the classes Thermoleophilia and Rubrobacteria and their orders and families International Journal of Systematic and Evolutionary Microbiology 66 (2) :652-665.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000770
2016 Wüst,P.K., Foesel,B.U., Geppert,A., Huber,K.J., Luckner,M., Wanner,G., Overmann,J. ( 2016 ) Brevitalea aridisoli, B. deliciosa, and Arenimicrobium luteum, three novel species of Acidobacteria subdivision 4 (class Blastocatellia) isolated from Namibian savanna soil and description of the novel family Pyrinomonadaceae Int J Syst Evol Microbiol

2016 Sikorski,J. ( 2016 ) Schmelztiegel Bodenbakterien Biologie in unserer Zeit 46 (6) :358-365.

http://dx.doi.org/10.1002/biuz.201610607
2016 Gossner,M.M., Lewinsohn,T.M., Kahl,T., Grassein,F., Boch,S., Prati,D., Birkhofer,K., Renner,S.C., Sikorski,J., Wubet,T., Arndt,H., Baumgartner,V., Blaser,S., Blüthgen,N., Börschig,C., Buscot,F., Diekötter,T., Jorge,L.R., Jung,K., Keyel,A.C., Klein,A.-M., Klemmer,S., Krauss,J., Lange,M., Müller,J., Overmann,J., Pasalic,E., Penone,C., Perovic,D.J., Purschke,O., Schall,P., Socher,S.A., Sonnemann,I., Tschapka,M., Tscharntke,T., Türke,M., Venter,P.C., Weiner,C.N., Werner,M., Wolters,V., Wurst,S., Westphal,C., Fischer,M., Weisser,W.W., Allan,E. ( 2016 ) Land-use intensification causes multitrophic homogenization of grassland communities Nature 540 (7632) :266-269.

http://dx.doi.org/10.1038/nature20575
2016 Soliveres,S., vanderPlas,F., Manning,P., Prati,D., Gossner,M.M., Renner,S.C., Alt,F., Arndt,H., Baumgartner,V., Binkenstein,J., Birkhofer,K., Blaser,S., Blüthgen,N., Boch,S., Böhm,S., Börschig,C., Buscot,F., Diekötter,T., Heinze,J., Hölzel,N., Jung,K., Klaus,V.H., Kleinebecker,T., Klemmer,S., Krauss,J., Lange,M., Morris,E.K., Müller,J., Oelmann,Y., Overmann,J., Pasalic,E., Rillig,M.C., Schaefer,H.M., Schloter,M., Schmitt,B., Schöning,I., Schrumpf,M., Sikorski,J., Socher,S.A., Solly,E.F., Sonnemann,I., Sorkau,E., Steckel,J., Steffan-Dewenter,I., Stempfhuber,B., Tschapka,M., Türke,M., Venter,P.C., Weiner,C.N., Weisser,W.W., Werner,M., Westphal,C., Wilcke,W., Wolters,V., Wubet,T., Wurst,S., Fischer,M., Allan,E. ( 2016 ) Biodiversity at multiple trophic levels is needed for ecosystem multifunctionality Nature advance online publication

http://dx.doi.org/10.1038/nature19092
2016 Doijad,S., Imirzalioglu,C., Yao,Y., Pati,N.B., Falgenhauer,L., Hain,T., Foesel,B.U., Abt,B., Overmann,J., Mirambo,M.M., Mshana,S.E., Chakraborty,T. ( 2016 ) Enterobacter bugandensis sp. nov., isolated from neonatal blood International Journal of Systematic and Evolutionary Microbiology 66 (2) :968-974.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000821
2016 Foesel,B.U., Geppert,A., Rohde,M., Overmann,J. ( 2016 ) Parviterribacter kavangonensis gen. nov., sp. nov. and Parviterribacter multiflagellatus sp. nov., novel members of Parviterribacteraceae fam. nov. within the order Solirubrobacterales, and emended descriptions of the classes Thermoleophilia and Rubrobacteria and their orders and families International Journal of Systematic and Evolutionary Microbiology 66 (2) :652-665.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000770
2016 Foesel,B.U., Mayer,S., Luckner,M., Wanner,G., Rohde,M., Overmann,J. ( 2016 ) Occallatibacter riparius gen. nov., sp. nov. and Occallatibacter savannae sp. nov., acidobacteria isolated from Namibian soils, and emended description of the family Acidobacteriaceae International Journal of Systematic and Evolutionary Microbiology 66 (1) :219-229.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000700
2016 Lagkouvardos,I., Pukall,R., Abt,B., Foesel,B.U., Meier-Kolthoff,J.P., Kumar,N., Bresciani,A., Martínez,I., Just,S., Ziegler,C., Brugiroux,S., Garzetti,D., Wenning,M., Bui,T.P.N., Wang,J., Hugenholtz,F., Plugge,C.M., Peterson,D.A., Hornef,M.W., Baines,J.F., Smidt,H., Walter,J., Kristiansen,K., Nielsen,H.B., Haller,D., Overmann,J., Stecher,B., Clavel,T. ( 2016 ) The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota Nature Microbiology 1 :16131.

http://dx.doi.org/10.1038/nmicrobiol.2016.131
2016 Cota,I., Bunk,B., Spröer,C., Overmann,J., Konig,C., Casadesus,J. ( 2016 ) OxyR-dependent formation of DNA methylation patterns in OpvABOFF and OpvABON cell lineages of Salmonella enterica Nucleic Acids Res 44 (8) :3595-609.

2016 Zaburannyi,N., Bunk,B., Maier,J., Overmann,J., Muller,R. ( 2016 ) Genome Analysis of the Fruiting Body-Forming Myxobacterium Chondromyces crocatus Reveals High Potential for Natural Product Biosynthesis Appl Environ Microbiol 82 (6) :1945-57.

2016 Ghosh,H., Doijad,S., Bunk,B., Falgenhauer,L., Yao,Y., Sproer,C., Gentil,K., Schmiedel,J., Imirzalioglu,C., Overmann,J., Chakraborty,T. ( 2016 ) Detection of translocatable units in a blaCTX-M-15 extended-spectrum beta-lactamase-producing ST131 Escherichia coli isolate using a hybrid sequencing approach Int J Antimicrob Agents 47 (3) :245-7.

2016 Huang,S., Vieira,S., Bunk,B., Riedel,T., Spröer,C., Overmann,J. ( 2016 ) First Complete Genome Sequence of a Subdivision 6 Acidobacterium Strain Genome Announc 4 (3)

2016 Falgenhauer,L., Waezsada,S.E., Gwozdzinski,K., Ghosh,H., Doijad,S., Bunk,B., Spröer,C., Imirzalioglu,C., Seifert,H., Irrgang,A., Fischer,J., Guerra,B., Kasbohrer,A., Overmann,J., Goesmann,A., Chakraborty,T. ( 2016 ) Chromosomal Locations of mcr-1 and blaCTX-M-15 in Fluoroquinolone-Resistant Escherichia coli ST410 Emerg Infect Dis 22 (9)

2016 Crenn,K., Serpin,D., Lepleux,C., Overmann,J., Jeanthon,C. ( 2016 ) Silicimonas algicola gen. nov., sp. nov., a novel member of the Roseobacter clade isolated from the cell surface of the marine diatom Thalassiosira delicatula Int J Syst Evol Microbiol

2016 Wüst,P.K., Foesel,B.U., Geppert,A., Huber,K.J., Luckner,M., Wanner,G., Overmann,J. ( 2016 ) Brevitalea aridisoli, B. deliciosa, and Arenimicrobium luteum, three novel species of Acidobacteria subdivision 4 (class Blastocatellia) isolated from Namibian savanna soil and description of the novel family Pyrinomonadaceae Int J Syst Evol Microbiol

2016 Huber,K.J., Geppert,A.M., Wanner,G., Fosel,B.U., Wust,P.K., Overmann,J. ( 2016 ) Vicinamibacter silvestris - The first representative of the globally widespread subdivision 6 Acidobacteria isolated from subtropical savannah soil Int J Syst Evol Microbiol

2016 Soliveres,S., Manning,P., Prati,D., Gossner,M.M., Alt,F., Arndt,H., Baumgartner,V., Binkenstein,J., Birkhofer,K., Blaser,S., Bluthgen,N., Boch,S., Bohm,S., Borschig,C., Buscot,F., Diekotter,T., Heinze,J., Holzel,N., Jung,K., Klaus,V.H., Klein,A.M., Kleinebecker,T., Klemmer,S., Krauss,J., Lange,M., Morris,E.K., Muller,J., Oelmann,Y., Overmann,J., Pasalic,E., Renner,S.C., Rillig,M.C., Schaefer,H.M., Schloter,M., Schmitt,B., Schoning,I., Schrumpf,M., Sikorski,J., Socher,S.A., Solly,E.F., Sonnemann,I., Sorkau,E., Steckel,J., Steffan-Dewenter,I., Stempfhuber,B., Tschapka,M., Turke,M., Venter,P., Weiner,C.N., Weisser,W.W., Werner,M., Westphal,C., Wilcke,W., Wolters,V., Wubet,T., Wurst,S., Fischer,M., Allan,E. ( 2016 ) Locally rare species influence grassland ecosystem multifunctionality Philos Trans R Soc Lond B Biol Sci 371 (1694)

http://www.ncbi.nlm.nih.gov/pubmed/27114572
2016 Stempfhuber,B., Richter-Heitmann,T., Regan,K.M., Kölbl,A., Kaul,P., Marhan,S., Sikorski,J., Overmann,J., Friedrich,M.W., Kandeler,E., Schloter,M. ( 2016 ) Spatial interaction of archaeal ammonia-oxidizers and nitrite-oxidizing bacteria in an unfertilized grassland soil Frontiers in Microbiology 6

http://www.frontiersin.org/Journal/Abstract.aspx?s=1102&name=terrestrial_microbiology&ART_DOI=10.3389/fmicb.2015.01567
2016 Wüst,P.K., Nacke,H., Kaiser,K., Marhan,S., Sikorski,J., Kandeler,E., Daniel,R., Overmann,J. ( 2016 ) Estimates of the bacterial ribosome content and diversity in soils are significantly affected by different nucleic acid extraction methods Applied and Environmental Microbiology doi: 10.1128/AEM.00019-16

http://aem.asm.org/content/early/2016/02/15/AEM.00019-16.abstract
2016 Menzel,W., Winter,S., Hamacher,J. ( 2016 ) First report of Eggplant mottled dwarf virus causing flower breaking and vein clearing in Hydrangea macrophylla in Germany New Disease Reports 34 :11.

2016 Reynard,J.S., Schumacher,S., Menzel,W., Fuchs,J., Bohnert,P., Gasa,M., Wetzel,T., Fuchs,R. ( 2016 ) First Report of Grapevine Pinot gris virus in German vineyards Plant Disease 100 (12) :2545.

2016 Khatabi,B., Arikit,S., Xia,R., Winter,S., Oumar,D., Mongomake,K., Meyers,B.C., Fondong,V.N. ( 2016 ) High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs BMC Genomics 17 :85.

2016 Richter,K.S., Götz,M., Winter,S., Jeske,H. ( 2016 ) The contribution of translesion synthesis polymerases on geminiviral replication Virology 488 :137-148.

2016 Naseem,S., Winter,S. ( 2016 ) Quantification of African cassava mosaic virus (ACMV) and East African cassava mosaic virus (EACMV-UG) in single and mixed infected Cassava (Manihot esculenta Crantz) using quantitative PCR Journal of Virological Methods 222 :23-32.

2016 Yurkov,A.M., Rohl,O., Pontes,A., Carvalho,C., Maldonado,C., Sampaio,J.P. ( 2016 ) Local climatic conditions constrain soil yeast diversity patterns in Mediterranean forests, woodlands and scrub biome FEMS Yeast Res 16 (1)

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2015 Zischka,M., Kunne,C.T., Blom,J., Wobser,D., Sakiotanc,T., Schmidt-Hohagen,K., Dabrowski,P.W., Nitsche,A., Hubner,J., Hain,T., Chakraborty,T., Linke,B., Goesmann,A., Voget,S., Daniel,R., Schomburg,D., Hauck,R., Hafez,H.M., Tielen,P., Jahn,D., Solheim,M., Sadowy,E., Larsen,J., Jensen,L.B., Ruiz-Garbajosa,P., Quinones,P.D., Mikalsen,T., Bender,J., Steglich,M., Nübel,U., Witte,W., Werner,G. ( 2015 ) Comprehensive molecular, genomic and phenotypic analysis of a major clone of Enterococcus faecalis MLST ST40 BMC Genomics 16 (1) :1367.

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2015 Steglich,M., Nitsche,A., von,M.L., Herrmann,M., Kohl,T.A., Niemann,S., Nübel,U. ( 2015 ) Tracing the Spread of Clostridium difficile Ribotype 027 in Germany Based on Bacterial Genome Sequences PLoS ONE 10 (10) :e0139811.

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2015 Layer,F., Sanchini,A., Strommenger,B., Cuny,C., Breier,A.C., Proquitte,H., Buhrer,C., Schenkel,K., Batzing-Feigenbaum,J., Greutelaers,B., Nübel,U., Gastmeier,P., Eckmanns,T., Werner,G. ( 2015 ) Molecular typing of toxic shock syndrome toxin-1- and Enterotoxin A-producing methicillin-sensitive Staphylococcus aureus isolates from an outbreak in a neonatal intensive care unit Int J Med Microbiol 305 (7) :790-798.

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2015 Hamed,M., Nitsche-Schmitz,D.P., Ruffing,U., Steglich,M., Dordel,J., Nguyen,D., Brink,J.H., Chhatwal,G.S., Herrmann,M., Nübel,U., Helms,V., vonMüller,L. ( 2015 ) Whole genome sequence typing and microarray profiling of nasal and blood stream methicillin-resistant Staphylococcus aureus isolates: Clues to phylogeny and invasiveness Infect Genet Evol 36 :475-482.

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2015 Haller,S., Eller,C., Hermes,J., Kaase,M., Steglich,M., Radonic,A., Dabrowski,P.W., Nitsche,A., Pfeifer,Y., Werner,G., Wunderle,W., Velasco,E., Abu,S.M., Eckmanns,T., Nübel,U. ( 2015 ) What caused the outbreak of ESBL-producing Klebsiella pneumoniae in a neonatal intensive care unit, Germany 2009 to 2012? Reconstructing transmission with epidemiological analysis and whole-genome sequencing BMJ Open 5 (5) :e007397.

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2015 Becker,L., Bunk,B., Eller,C., Steglich,M., Pfeifer,Y., Werner,G., Nübel,U. ( 2015 ) Complete Genome Sequence of a CTX-M-15-Producing Klebsiella pneumoniae Outbreak Strain from Multilocus Sequence Type 514 Genome Announc. 3 (4)

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2015 O'Brien,K., Lowry,M.C., Corcoran,C., Martinez,V.G., Daly,M., Rani,S., Gallagher,W.M., Radomski,M.W., MacLeod,R.A., O'Driscoll,L. ( 2015 ) miR-134 in extracellular vesicles reduces triple-negative breast cancer aggression and increases drug sensitivity Oncotarget

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2015 Nagel,S., Meyer,C., Kaufmann,M., Drexler,H.G., MacLeod,R.A. ( 2015 ) Aberrant expression of homeobox gene SIX1 in Hodgkin lymphoma Oncotarget 6 (37) :40112-26.

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2015 Dai,H.P., Ehrentraut,S., Nagel,S., Eberth,S., Pommerenke,C., Dirks,W.G., Geffers,R., Kalavalapalli,S., Kaufmann,M., Meyer,C., Faehnrich,S., Chen,S., Drexler,H.G., MacLeod,R.A. ( 2015 ) Genomic landscape of primary mediastinal B-cell lymphoma cell lines PLoS One 10 (11) :e0139663.

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2015 Kretzmer,H., Bernhart,S.H., Wang,W., Haake,A., Weniger,M.A., Bergmann,A.K., Betts,M.J., Carrillo-de-Santa-Pau,E., Doose,G., Gutwein,J., Richter,J., Hovestadt,V., Huang,B., Rico,D., Juhling,F., Kolarova,J., Lu,Q., Otto,C., Wagener,R., Arnolds,J., Burkhardt,B., Claviez,A., Drexler,H.G., Eberth,S., Eils,R., Flicek,P., Haas,S., Hummel,M., Karsch,D., Kerstens,H.H., Klapper,W., Kreuz,M., Lawerenz,C., Lenze,D., Loeffler,M., Lopez,C., MacLeod,R.A., Martens,J.H., Kulis,M., Martin-Subero,J.I., Moller,P., Nagel,I., Picelli,S., Vater,I., Rohde,M., Rosenstiel,P., Rosolowski,M., Russell,R.B., Schilhabel,M., Schlesner,M., Stadler,P.F., Szczepanowski,M., Trumper,L., Stunnenberg,H.G., project,I.M.-S., project,B., Kuppers,R., Ammerpohl,O., Lichter,P., Siebert,R., Hoffmann,S., Radlwimmer,B. ( 2015 ) DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control Nat Genet 47 (11) :1316-25.

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2015 Nagel,S., Ehrentraut,S., Meyer,C., Kaufmann,M., Drexler,H.G., MacLeod,R.A. ( 2015 ) Aberrantly Expressed OTX Homeobox Genes Deregulate B-Cell Differentiation in Hodgkin Lymphoma PLoS One 10 (9) :e0138416.

http://www.ncbi.nlm.nih.gov/pubmed/26406991
2015 Ping,N., Qiu,H., Wang,Q., Dai,H., Ruan,C., Ehrentraut,S., Drexler,H.G., MacLeod,R.A., Chen,S. ( 2015 ) Establishment and genetic characterization of a novel mixed-phenotype acute leukemia cell line with EP300-ZNF384 fusion J Hematol Oncol 8 (1) :100.

http://www.ncbi.nlm.nih.gov/pubmed/26293203
2015 Wagener,R., Aukema,S.M., Schlesner,M., Haake,A., Burkhardt,B., Claviez,A., Drexler,H.G., Hummel,M., Kreuz,M., Loeffler,M., Rosolowski,M., Lopez,C., Moller,P., Richter,J., Rohde,M., Betts,M.J., Russell,R.B., Bernhart,S.H., Hoffmann,S., Rosenstiel,P., Schilhabel,M., Szczepanowski,M., Trumper,L., Klapper,W., Siebert,R., Seq-Project,I.M.-., the"MolecularMechanismsinMalignantLymphomas"NetworkProjectoftheDeutsche,K. ( 2015 ) The PCBP1 gene encoding poly(rc) binding protein i is recurrently mutated in Burkitt lymphoma Genes Chromosomes Cancer 54 (9) :555-64.

http://www.ncbi.nlm.nih.gov/pubmed/26173642
2015 Kalfalah,F.M., Berg,E., Christensen,M.O., Linka,R.M., Dirks,W.G., Boege,F., Mielke,C. ( 2015 ) Spatio-temporal regulation of the human licensing factor Cdc6 in replication and mitosis Cell Cycle 14 (11) :1704-15.

http://www.ncbi.nlm.nih.gov/pubmed/25875233
2015 Wagener,R., Alexandrov,L.B., Montesinos-Rongen,M., Schlesner,M., Haake,A., Drexler,H.G., Richter,J., Bignell,G.R., McDermott,U., Siebert,R. ( 2015 ) Analysis of mutational signatures in exomes from B-cell lymphoma cell lines suggest APOBEC3 family members to be involved in the pathogenesis of primary effusion lymphoma Leukemia 29 (7) :1612-5.

http://www.ncbi.nlm.nih.gov/pubmed/25650088
2015 Ding,J., Dirks,W.G., Ehrentraut,S., Geffers,R., MacLeod,R.A., Nagel,S., Pommerenke,C., Romani,J., Scherr,M., Vaas,L.A., Zaborski,M., Drexler,H.G., Quentmeier,H. ( 2015 ) BCL6 - regulated by AhR/ARNT and wild-type MEF2B - drives expression of germinal center markers MYBL1 and LMO2 Haematologica 100 (6) :801-9.

http://www.ncbi.nlm.nih.gov/pubmed/25769544
2015 Wu,L., Xu,Y., Wang,Q., Ruan,C., Drexler,H.G., Wu,D., MacLeod,R.A., Chen,S. ( 2015 ) High frequency of cryptic chromosomal rearrangements involving the LMO2 gene in T-cell acute lymphoblastic leukemia Haematologica 100 (6) :e233-6.

http://www.ncbi.nlm.nih.gov/pubmed/25682596
2015 Nagel,S., Ehrentraut,S., Meyer,C., Kaufmann,M., Drexler,H.G., MacLeod,R.A. ( 2015 ) NFkB is activated by multiple mechanisms in hairy cell leukemia Genes Chromosomes Cancer 54 (7) :418-32.

http://www.ncbi.nlm.nih.gov/pubmed/25960206
2015 Michaelis,M., Agha,B., Rothweiler,F., Loschmann,N., Voges,Y., Mittelbronn,M., Starzetz,T., Harter,P.N., Abhari,B.A., Fulda,S., Westermann,F., Riecken,K., Spek,S., Langer,K., Wiese,M., Dirks,W.G., Zehner,R., Cinatl,J., Wass,M.N., Cinatl,J.,Jr. ( 2015 ) Identification of flubendazole as potential anti-neuroblastoma compound in a large cell line screen Sci Rep 5 :8202.

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2015 Uphoff,C.C., Lange,S., Denkmann,S.A., Garritsen,H.S., Drexler,H.G. ( 2015 ) Prevalence and characterization of murine leukemia virus contamination in human cell lines PLoS One 10 (4) :e0125622.

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2015 Nagel,S., Ehrentraut,S., Meyer,C., Kaufmann,M., Drexler,H.G., MacLeod,R.A. ( 2015 ) Repressed BMP signaling reactivates NKL homeobox gene MSX1 in a T-ALL subset Leuk Lymphoma 56 (2) :480-91.

http://www.ncbi.nlm.nih.gov/pubmed/24844359
2015 Kollmann,K., Nangalia,J., Warsch,W., Quentmeier,H., Bench,A., Boyd,E., Scott,M., Drexler,H.G., Green,A.R. ( 2015 ) MARIMO cells harbor a CALR mutation but are not dependent on JAK2/STAT5 signaling Leukemia 29 (2) :494-7.

http://www.ncbi.nlm.nih.gov/pubmed/25249012
2015 Jones,A.V., Ward,D., Lyon,M., Leung,W., Callaway,A., Chase,A., Dent,C.L., White,H.E., Drexler,H.G., Nangalia,J., Mattocks,C., Cross,N.C. ( 2015 ) Evaluation of methods to detect CALR mutations in myeloproliferative neoplasms Leuk Res 39 (1) :82-7.

http://www.ncbi.nlm.nih.gov/pubmed/25499808
2015 Drexler,H.G., Ehrentraut,S., Nagel,S., Eberth,S., MacLeod,R.A. ( 2015 ) Malignant hematopoietic cell lines: In vitro models for the study of primary mediastinal B-cell lymphomas Leuk Res 39 (1) :18-29.

http://www.ncbi.nlm.nih.gov/pubmed/25480038
2015 Zhang,D.C., Schumann,P., Wu,J., Franca,L., Neuner,K., Margesin,R. ( 2015 ) Virgibacillus flavescens sp. nov. isolated from sediment of the Yellow Sea in China Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/26674201
2015 Yurkov,A.M., Kachalkin,A.V., Daniel,H.M., Groenewald,M., Libkind,D., de,G.,V, Zalar,P., Gouliamova,D.E., Boekhout,T., Begerow,D. ( 2015 ) Two yeast species Cystobasidium psychroaquaticum f.a. sp. nov. and Cystobasidium rietchieii f.a. sp. nov. isolated from natural environments, and the transfer of Rhodotorula minuta clade members to the genus Cystobasidium Antonie Van Leeuwenhoek 107 (1) :173-185.

http://www.ncbi.nlm.nih.gov/pubmed/25367339
2015 Yurkov,A., Inacio,J., Chernov,I.Y., Fonseca,A. ( 2015 ) Yeast biogeography and the effects of species recognition approaches: the case study of widespread basidiomycetous species from birch forests in Russia Curr Microbiol 70 (4) :587-601.

http://www.ncbi.nlm.nih.gov/pubmed/25527366
2015 Yurkov,A., Guerreiro,M.A., Sharma,L., Carvalho,C., Fonseca,A. ( 2015 ) Correction: Multigene Assessment of the Species Boundaries and Sexual Status of the Basidiomycetous Yeasts Cryptococcus flavescens and C. terrestris (Tremellales) PLoS ONE 10 (4) :e0126996.

http://www.ncbi.nlm.nih.gov/pubmed/25910228
2015 Yurkov,A., Guerreiro,M.A., Sharma,L., Carvalho,C., Fonseca,A. ( 2015 ) Multigene Assessment of the Species Boundaries and Sexual Status of the Basidiomycetous Yeasts Cryptococcus flavescens and C. terrestris (Tremellales) PLoS ONE 10 (3) :e0120400.

http://www.ncbi.nlm.nih.gov/pubmed/25811603
2015 Yassin,A.F., Sproer,C., Pukall,R., Sylvester,M., Siering,C., Schumann,P. ( 2015 ) Dissection of the genus Actinobaculum: Reclassification of Actinobaculum schaalii Lawson et al. 1997 and Actinobaculum urinale Hall et al. 2003 as Actinotignum schaalii gen. nov., comb. nov. and Actinotignum urinale comb. nov., description of Actinotignum sanguinis sp. nov. and emended descriptions of the genus Actinobaculum and Actinobaculum suis; and re-examination of the culture deposited as Actinobaculum massiliense CCUG 47753T ( = DSM 19118T), revealing that it does not represent a strain of this species Int J Syst Evol Microbiol 65 (Pt 2) :615-624.

http://www.ncbi.nlm.nih.gov/pubmed/25406238
2015 Yassin,A.F., Sproer,C., Pukall,R., Schumann,P. ( 2015 ) The status of the species Actinobaculum massiliense (Greub and Raoult 2006). Request for an Opinion Int J Syst Evol Microbiol 65 (Pt 3) :1102-1103.

http://www.ncbi.nlm.nih.gov/pubmed/25479952
2015 Yassin,A.F., Lapidus,A., Han,J., Reddy,T.B., Huntemann,M., Pati,A., Ivanova,N., Markowitz,V., Woyke,T., Klenk,H.P., Kyrpides,N.C. ( 2015 ) High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395(T) (DSM 45146(T)) Stand Genomic Sci 10 :50.

http://www.ncbi.nlm.nih.gov/pubmed/26380638
2015 Xing,P., Hahnke,R.L., Unfried,F., Markert,S., Huang,S., Barbeyron,T., Harder,J., Becher,D., Schweder,T., Glockner,F.O., Amann,R.I., Teeling,H. ( 2015 ) Niches of two polysaccharide-degrading Polaribacter isolates from the North Sea during a spring diatom bloom ISME J 9 (6) :1410-1422.

http://www.ncbi.nlm.nih.gov/pubmed/25478683
2015 Wittmann,J., Riedel,T., Bunk,B., Sproer,C., Gronow,S., Overmann,J. ( 2015 ) Complete Genome Sequence of the Novel Temperate Clostridium difficile Phage phiCDIF1296T Genome Announc. 3 (4)

http://www.ncbi.nlm.nih.gov/pubmed/26294621
2015 Wittmann,J., Klumpp,J., MorenoSwitt,A.I., Yagubi,A., Ackermann,H.W., Wiedmann,M., Svircev,A., Nash,J.H., Kropinski,A.M. ( 2015 ) Taxonomic reassessment of N4-like viruses using comparative genomics and proteomics suggests a new subfamily - "Enquartavirinae" Arch Virol.

http://www.ncbi.nlm.nih.gov/pubmed/26395091
2015 Windmuller,N., Witten,A., Block,D., Bunk,B., Sproer,C., Kahl,B.C., Mellmann,A. ( 2015 ) Transcriptional adaptations during long-term persistence of Staphylococcus aureus in the airways of a cystic fibrosis patient Int J Med Microbiol 305 (1) :38-46.

http://www.ncbi.nlm.nih.gov/pubmed/25439320
2015 Wilk,E., Pandey,A.K., Leist,S.R., Hatesuer,B., Preusse,M., Pommerenke,C., Wang,J., Schughart,K. ( 2015 ) RNAseq expression analysis of resistant and susceptible mice after influenza A virus infection identifies novel genes associated with virus replication and important for host resistance to infection BMC Genomics 16 :655.

http://www.ncbi.nlm.nih.gov/pubmed/26329040