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Publications

Publications
2018 Aurass,P., Duvel,J., Karste,S., Nübel,U., Rabsch,W., Flieger,A. ( 2018 ) glnA truncation in Salmonella enterica results in a small colony variant phenotype, attenuated host cell entry, and reduced expression of flagellin and SPI-1-associated effector genes Applied and Environmental Microbiology 84 (2)

://WOS:000419048900011
2018 Becker,L., Fuchs,S., Pfeifer,Y., Semmler,T., Eckmanns,T., Korr,G., Sissolak,D., Friedrichs,M., Zill,E., Tung,M.L., Dohle,C., Kaase,M., Gatermann,S., Russmann,H., Steglich,M., Haller,S., Werner,G. ( 2018 ) Whole Genome Sequence Analysis of CTX-M-15 Producing Klebsiella Isolates Allowed Dissecting a Polyclonal Outbreak Scenario Front Microbiol 9 :322.

https://www.ncbi.nlm.nih.gov/pubmed/29527200
2018 Mohr,K.I., Moradi,A., Glaeser,S.P., Kampfer,P., Gemperlein,K., Nübel,U., Schumann,P., Müller,R., Wink,J. ( 2018 ) Nannocystis konarekensis sp. nov., a novel myxobacterium from an Iranian desert Int J Syst Evol Microbiol 68 (3) :721-729.

https://www.ncbi.nlm.nih.gov/pubmed/29458458
2018 Mohr,K.I., Wolf,C., Nübel,U., Szafranska,A.K., Steglich,M., Hennessen,F., Gemperlein,K., Kämpfer,P., Martin,K., Müller,R., Wink,J. ( 2018 ) A polyphasic approach leads to seven new species of the cellulose-decomposing genus Sorangium, Sorangium ambruticinum sp. nov., Sorangium arenae sp. nov., Sorangium bulgaricum sp. nov., Sorangium dawidii sp. nov., Sorangium kenyense sp. nov., Sorangium orientale sp. nov. and Sorangium reichenbachii sp. nov Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/30234476
2018 Overmann,J., Huang,S., Nübel,U., Hahnke,R.L., Tindall,B.J. ( 2018 ) Relevance of phenotypic information for the taxonomy of not-yet-cultured microorganisms Syst Appl Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/30197212
2018 Steglich,M., Hofmann,J.D., Helmecke,J., Sikorski,J., Spröer,C., Riedel,T., Bunk,B., Overmann,J., Neumann-Schaal,M., Nübel,U. ( 2018 ) Convergent loss of ABC transporter genes from Clostridioides difficile genomes is associated with impaired tyrosine uptake and p-cresol production Front Microbiol 9 :901.

https://www.ncbi.nlm.nih.gov/pubmed/29867812
2017 vanIngen,J., Kohl,T.A., Kranzer,K., Hasse,B., Keller,P.M., KatarzynaSzafranska,A., Hillemann,D., Chand,M., Schreiber,P.W., Sommerstein,R., Berger,C., Genoni,M., Ruegg,C., Troillet,N., Widmer,A.F., Becker,S.L., Herrmann,M., Eckmanns,T., Haller,S., Holler,C., Debast,S.B., Wolfhagen,M.J., Hopman,J., Kluytmans,J., Langelaar,M., Notermans,D.W., TenOever,J., vandenBarselaar,P., Vonk,A.B.A., Vos,M.C., Ahmed,N., Brown,T., Crook,D., Lamagni,T., Phin,N., Smith,E.G., Zambon,M., Serr,A., Gotting,T., Ebner,W., Thurmer,A., Utpatel,C., Sproer,C., Bunk,B., Nübel,U., Bloemberg,G.V., Bottger,E.C., Niemann,S., Wagner,D., Sax,H. ( 2017 ) Global outbreak of severe Mycobacterium chimaera disease after cardiac surgery: a molecular epidemiological study Lancet Infect Dis 17 (10) :1033-1041.

https://www.ncbi.nlm.nih.gov/pubmed/28711585
2017 Dößelmann,B., Willmann,M., Steglich,M., Bunk,B., Nübel,U., Peters,S., Neher,R.A. ( 2017 ) Rapid and consistent evolution of colistin resistance in extensively drug-resistant Pseudomonas aeruginosa during morbidostat culture Antimicrobial Agents and Chemotherapy 61 (9) :e00043-17.

https://www.ncbi.nlm.nih.gov/pubmed/28630206
2017 Gerlach,R.G., Walter,S., McClelland,M., Schmidt,C., Steglich,M., Prager,R., Bender,J.K., Fuchs,S., Schoerner,C., Rabsch,W., Lang,W., Jantsch,J. ( 2017 ) Comparative whole genome analysis of three consecutive Salmonella diarizonae isolates Int J Med Microbiol 307 (8) :542-551.

http://www.ncbi.nlm.nih.gov/pubmed/28939438
2017 Steglich,M., Nübel,U. ( 2017 ) The challenge of detecting indels in bacterial genomes from short-read sequencing data J. Biotechnol. 250 :11-15.

2017 vanIngen,J., Kohl,T.A., Kranzer,K., Hasse,B., Keller,P., Szafranska,A.K., Hilleman,D., Chand,M., Schreiber,P.W., Sommerstein,R., Berger,C., Genoni,M., Rüegg,C., Troillet,N., Widmer,A.F., Becker,S., Herrmann,M., Eckmanns,T., Haller,S., Höller,C., Debast,S.B., Wolfhagen,M.J., Hopman,J., Kluytmans,J., Langelaar,M., Notermans,D.W., tenOever,J., vandenBaarselaar,P., Vonk,A.B., Vos,M.C., Ahmed,N., Brown,T., Crook,D., Lamagni,T., Phin,N., Smith,G., Zambon,M., Serr,A., Götting,T., Ebner,W., Thürmer,A., Utpatel,C., Spröer,C., Bunk,B., Nübel,U., Bloemberg,G.V., Böttger,E.C., Niemann,S., Wagner,D., Sax,H. ( 2017 ) Global outbreak of severe Mycobacterium chimaera disease after cardiac surgery: a molecular epidemiological study The Lancet Infectious Diseases S1473-3099(17) :30324-9.

2016 Becker,L., Steglich,M., Fuchs,S., Werner,G., Nübel,U. ( 2016 ) Comparison of six commercial kits to extract bacterial chromosome and plasmid DNA for MiSeq sequencing Sci Rep 6 :28063.

http://www.ncbi.nlm.nih.gov/pubmed/27312200
2016 Nübel,U. ( 2016 ) Emergence and spread of antimicrobial resistance: recent insights from bacterial population genomics Current Topics in Microbiology and Immunology 398 :35-53.

http://dx.doi.org/10.1007/82_2016_505
2015 Becker,L., Bunk,B., Eller,C., Steglich,M., Pfeifer,Y., Werner,G., Nübel,U. ( 2015 ) Complete Genome Sequence of a CTX-M-15-Producing Klebsiella pneumoniae Outbreak Strain from Multilocus Sequence Type 514 Genome Announc. 3 (4)

http://www.ncbi.nlm.nih.gov/pubmed/26159529
2015 Haller,S., Eller,C., Hermes,J., Kaase,M., Steglich,M., Radonic,A., Dabrowski,P.W., Nitsche,A., Pfeifer,Y., Werner,G., Wunderle,W., Velasco,E., Abu,S.M., Eckmanns,T., Nübel,U. ( 2015 ) What caused the outbreak of ESBL-producing Klebsiella pneumoniae in a neonatal intensive care unit, Germany 2009 to 2012? Reconstructing transmission with epidemiological analysis and whole-genome sequencing BMJ Open 5 (5) :e007397.

http://www.ncbi.nlm.nih.gov/pubmed/25967999
2015 Hamed,M., Nitsche-Schmitz,D.P., Ruffing,U., Steglich,M., Dordel,J., Nguyen,D., Brink,J.H., Chhatwal,G.S., Herrmann,M., Nübel,U., Helms,V., vonMüller,L. ( 2015 ) Whole genome sequence typing and microarray profiling of nasal and blood stream methicillin-resistant Staphylococcus aureus isolates: Clues to phylogeny and invasiveness Infect Genet Evol 36 :475-482.

http://www.ncbi.nlm.nih.gov/pubmed/26297907
2015 Layer,F., Sanchini,A., Strommenger,B., Cuny,C., Breier,A.C., Proquitte,H., Buhrer,C., Schenkel,K., Batzing-Feigenbaum,J., Greutelaers,B., Nübel,U., Gastmeier,P., Eckmanns,T., Werner,G. ( 2015 ) Molecular typing of toxic shock syndrome toxin-1- and Enterotoxin A-producing methicillin-sensitive Staphylococcus aureus isolates from an outbreak in a neonatal intensive care unit Int J Med Microbiol 305 (7) :790-798.

http://www.ncbi.nlm.nih.gov/pubmed/26321006
2015 Steglich,M., Nitsche,A., von,M.L., Herrmann,M., Kohl,T.A., Niemann,S., Nübel,U. ( 2015 ) Tracing the Spread of Clostridium difficile Ribotype 027 in Germany Based on Bacterial Genome Sequences PLoS ONE 10 (10) :e0139811.

http://www.ncbi.nlm.nih.gov/pubmed/26444881
2015 Zischka,M., Kunne,C.T., Blom,J., Wobser,D., Sakiotanc,T., Schmidt-Hohagen,K., Dabrowski,P.W., Nitsche,A., Hubner,J., Hain,T., Chakraborty,T., Linke,B., Goesmann,A., Voget,S., Daniel,R., Schomburg,D., Hauck,R., Hafez,H.M., Tielen,P., Jahn,D., Solheim,M., Sadowy,E., Larsen,J., Jensen,L.B., Ruiz-Garbajosa,P., Quinones,P.D., Mikalsen,T., Bender,J., Steglich,M., Nübel,U., Witte,W., Werner,G. ( 2015 ) Comprehensive molecular, genomic and phenotypic analysis of a major clone of Enterococcus faecalis MLST ST40 BMC Genomics 16 (1) :1367.

http://www.ncbi.nlm.nih.gov/pubmed/25776700