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2018 Seth-Smith,H.M.B., Imkamp,F., Tagini,F., Cuenod,A., Homke,R., Jahn,K., Tschacher,A., Grendelmeier,P., Battig,V., Erb,S., Reinhard,M., Rutimann,G., Borrell,S., Gagneux,S., Casanova,C., Droz,S., Osthoff,M., Tamm,M., Nubel,U., Greub,G., Keller,P.M., Egli,A. ( 2018 ) Discovery and Characterization of Mycobacterium basiliense sp. nov., a Nontuberculous Mycobacterium Isolated From Human Lungs Front Microbiol 9 :3184.

2018 Merker,M., Barbier,M., Cox,H., Rasigade,J.P., Feuerriegel,S., Kohl,T.A., Diel,R., Borrell,S., Gagneux,S., Nikolayevskyy,V., Andres,S., Nubel,U., Supply,P., Wirth,T., Niemann,S. ( 2018 ) Compensatory evolution drives multidrug-resistant tuberculosis in Central Asia Elife 7

2018 Mohr,K.I., Wolf,C., Nübel,U., Szafranska,A.K., Steglich,M., Hennessen,F., Gemperlein,K., Kämpfer,P., Martin,K., Müller,R., Wink,J. ( 2018 ) A polyphasic approach leads to seven new species of the cellulose-decomposing genus Sorangium, Sorangium ambruticinum sp. nov., Sorangium arenae sp. nov., Sorangium bulgaricum sp. nov., Sorangium dawidii sp. nov., Sorangium kenyense sp. nov., Sorangium orientale sp. nov. and Sorangium reichenbachii sp. nov Int J Syst Evol Microbiol

2018 Steglich,M., Hofmann,J.D., Helmecke,J., Sikorski,J., Spröer,C., Riedel,T., Bunk,B., Overmann,J., Neumann-Schaal,M., Nübel,U. ( 2018 ) Convergent loss of ABC transporter genes from Clostridioides difficile genomes is associated with impaired tyrosine uptake and p-cresol production Front Microbiol 9 :901.

2018 Aurass,P., Duvel,J., Karste,S., Nübel,U., Rabsch,W., Flieger,A. ( 2018 ) glnA truncation in Salmonella enterica results in a small colony variant phenotype, attenuated host cell entry, and reduced expression of flagellin and SPI-1-associated effector genes Applied and Environmental Microbiology 84 (2)

2018 Overmann,J., Huang,S., Nübel,U., Hahnke,R.L., Tindall,B.J. ( 2018 ) Relevance of phenotypic information for the taxonomy of not-yet-cultured microorganisms Syst Appl Microbiol

2018 Mohr,K.I., Moradi,A., Glaeser,S.P., Kampfer,P., Gemperlein,K., Nübel,U., Schumann,P., Müller,R., Wink,J. ( 2018 ) Nannocystis konarekensis sp. nov., a novel myxobacterium from an Iranian desert Int J Syst Evol Microbiol 68 (3) :721-729.

2018 Becker,L., Fuchs,S., Pfeifer,Y., Semmler,T., Eckmanns,T., Korr,G., Sissolak,D., Friedrichs,M., Zill,E., Tung,M.L., Dohle,C., Kaase,M., Gatermann,S., Russmann,H., Steglich,M., Haller,S., Werner,G. ( 2018 ) Whole Genome Sequence Analysis of CTX-M-15 Producing Klebsiella Isolates Allowed Dissecting a Polyclonal Outbreak Scenario Front Microbiol 9 :322.

2017 Dößelmann,B., Willmann,M., Steglich,M., Bunk,B., Nübel,U., Peters,S., Neher,R.A. ( 2017 ) Rapid and consistent evolution of colistin resistance in extensively drug-resistant Pseudomonas aeruginosa during morbidostat culture Antimicrobial Agents and Chemotherapy 61 (9) :e00043-17.

2017 vanIngen,J., Kohl,T.A., Kranzer,K., Hasse,B., Keller,P.M., KatarzynaSzafranska,A., Hillemann,D., Chand,M., Schreiber,P.W., Sommerstein,R., Berger,C., Genoni,M., Ruegg,C., Troillet,N., Widmer,A.F., Becker,S.L., Herrmann,M., Eckmanns,T., Haller,S., Holler,C., Debast,S.B., Wolfhagen,M.J., Hopman,J., Kluytmans,J., Langelaar,M., Notermans,D.W., TenOever,J., vandenBarselaar,P., Vonk,A.B.A., Vos,M.C., Ahmed,N., Brown,T., Crook,D., Lamagni,T., Phin,N., Smith,E.G., Zambon,M., Serr,A., Gotting,T., Ebner,W., Thurmer,A., Utpatel,C., Sproer,C., Bunk,B., Nübel,U., Bloemberg,G.V., Bottger,E.C., Niemann,S., Wagner,D., Sax,H. ( 2017 ) Global outbreak of severe Mycobacterium chimaera disease after cardiac surgery: a molecular epidemiological study Lancet Infect Dis 17 (10) :1033-1041.

2017 vanIngen,J., Kohl,T.A., Kranzer,K., Hasse,B., Keller,P., Szafranska,A.K., Hilleman,D., Chand,M., Schreiber,P.W., Sommerstein,R., Berger,C., Genoni,M., Rüegg,C., Troillet,N., Widmer,A.F., Becker,S., Herrmann,M., Eckmanns,T., Haller,S., Höller,C., Debast,S.B., Wolfhagen,M.J., Hopman,J., Kluytmans,J., Langelaar,M., Notermans,D.W., tenOever,J., vandenBaarselaar,P., Vonk,A.B., Vos,M.C., Ahmed,N., Brown,T., Crook,D., Lamagni,T., Phin,N., Smith,G., Zambon,M., Serr,A., Götting,T., Ebner,W., Thürmer,A., Utpatel,C., Spröer,C., Bunk,B., Nübel,U., Bloemberg,G.V., Böttger,E.C., Niemann,S., Wagner,D., Sax,H. ( 2017 ) Global outbreak of severe Mycobacterium chimaera disease after cardiac surgery: a molecular epidemiological study The Lancet Infectious Diseases S1473-3099(17) :30324-9.

2017 Gerlach,R.G., Walter,S., McClelland,M., Schmidt,C., Steglich,M., Prager,R., Bender,J.K., Fuchs,S., Schoerner,C., Rabsch,W., Lang,W., Jantsch,J. ( 2017 ) Comparative whole genome analysis of three consecutive Salmonella diarizonae isolates Int J Med Microbiol 307 (8) :542-551.

2017 Steglich,M., Nübel,U. ( 2017 ) The challenge of detecting indels in bacterial genomes from short-read sequencing data J. Biotechnol. 250 :11-15.

2016 Nübel,U. ( 2016 ) Emergence and spread of antimicrobial resistance: recent insights from bacterial population genomics Current Topics in Microbiology and Immunology 398 :35-53.

2016 Becker,L., Steglich,M., Fuchs,S., Werner,G., Nübel,U. ( 2016 ) Comparison of six commercial kits to extract bacterial chromosome and plasmid DNA for MiSeq sequencing Sci Rep 6 :28063.

2015 Hamed,M., Nitsche-Schmitz,D.P., Ruffing,U., Steglich,M., Dordel,J., Nguyen,D., Brink,J.H., Chhatwal,G.S., Herrmann,M., Nübel,U., Helms,V., vonMüller,L. ( 2015 ) Whole genome sequence typing and microarray profiling of nasal and blood stream methicillin-resistant Staphylococcus aureus isolates: Clues to phylogeny and invasiveness Infect Genet Evol 36 :475-482.

2015 Zischka,M., Kunne,C.T., Blom,J., Wobser,D., Sakiotanc,T., Schmidt-Hohagen,K., Dabrowski,P.W., Nitsche,A., Hubner,J., Hain,T., Chakraborty,T., Linke,B., Goesmann,A., Voget,S., Daniel,R., Schomburg,D., Hauck,R., Hafez,H.M., Tielen,P., Jahn,D., Solheim,M., Sadowy,E., Larsen,J., Jensen,L.B., Ruiz-Garbajosa,P., Quinones,P.D., Mikalsen,T., Bender,J., Steglich,M., Nübel,U., Witte,W., Werner,G. ( 2015 ) Comprehensive molecular, genomic and phenotypic analysis of a major clone of Enterococcus faecalis MLST ST40 BMC Genomics 16 (1) :1367.

2015 Steglich,M., Nitsche,A., von,M.L., Herrmann,M., Kohl,T.A., Niemann,S., Nübel,U. ( 2015 ) Tracing the Spread of Clostridium difficile Ribotype 027 in Germany Based on Bacterial Genome Sequences PLoS ONE 10 (10) :e0139811.

2015 Layer,F., Sanchini,A., Strommenger,B., Cuny,C., Breier,A.C., Proquitte,H., Buhrer,C., Schenkel,K., Batzing-Feigenbaum,J., Greutelaers,B., Nübel,U., Gastmeier,P., Eckmanns,T., Werner,G. ( 2015 ) Molecular typing of toxic shock syndrome toxin-1- and Enterotoxin A-producing methicillin-sensitive Staphylococcus aureus isolates from an outbreak in a neonatal intensive care unit Int J Med Microbiol 305 (7) :790-798.

2015 Haller,S., Eller,C., Hermes,J., Kaase,M., Steglich,M., Radonic,A., Dabrowski,P.W., Nitsche,A., Pfeifer,Y., Werner,G., Wunderle,W., Velasco,E., Abu,S.M., Eckmanns,T., Nübel,U. ( 2015 ) What caused the outbreak of ESBL-producing Klebsiella pneumoniae in a neonatal intensive care unit, Germany 2009 to 2012? Reconstructing transmission with epidemiological analysis and whole-genome sequencing BMJ Open 5 (5) :e007397.

2015 Becker,L., Bunk,B., Eller,C., Steglich,M., Pfeifer,Y., Werner,G., Nübel,U. ( 2015 ) Complete Genome Sequence of a CTX-M-15-Producing Klebsiella pneumoniae Outbreak Strain from Multilocus Sequence Type 514 Genome Announc. 3 (4)