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Publications Department Microorganisms

sorted by publication date. For a complete list of the DSMZ publications, click here.

 

Publications
2014 Wink,J., Schumann,P., Spöer,C., Eisenbarth,K., Glaeser,S.P., Martin,K., Kämpfer,P. ( 2014 ) Emended description of Actinoplanes friuliensis and description of Actinoplanes nipponensis sp. nov., antibiotic-producing species of the genus Actinoplanes International journal of systematic and evolutionary microbiology 64 (Pt 2) :599-606.

http://www.ncbi.nlm.nih.gov/pubmed/24158947

2014 Tindall,B.J. ( 2014 ) A note on the genus name Rhodococcus Zopf 1891 and its homonyms International journal of systematic and evolutionary microbiology 64 (Pt 3) :1062-1064.

http://www.ncbi.nlm.nih.gov/pubmed/24623821

2014 Tindall,B.J. ( 2014 ) What ever happened to Thermomicrobium fosteri Phillips and Perry 1976? International journal of systematic and evolutionary microbiology 64 (Pt 3) :1065-1067.

http://www.ncbi.nlm.nih.gov/pubmed/24623822

2014 Tindall,B.J. ( 2014 ) On the status of the species name Streptomyces ruanii Kumar and Goodfellow 2008 International journal of systematic and evolutionary microbiology 64 (Pt 3) :1068-1070.

http://www.ncbi.nlm.nih.gov/pubmed/24623823

2014 Tindall,B.J. ( 2014 ) The correct name of the taxon that contains the type strain of Rhodococcus equi International journal of systematic and evolutionary microbiology 64 (Pt 1) :302-308.

http://www.ncbi.nlm.nih.gov/pubmed/24408951

2014 Tindall,B.J. ( 2014 ) The family name Solimonadaceae Losey et al. 2013 is illegitimate, proposals to create the names 'Sinobacter soli' comb. nov. and 'Sinobacter variicoloris' contravene the Code, the family name Xanthomonadaceae Saddler and Bradbury 2005 and the order name Xanthomonadales Saddler and Bradbury 2005 are illegitimate and notes on the application of the family names Solibacteraceae Zhou et al. 2008, Nevskiaceae Henrici and Johnson 1935 (Approved Lists 1980) and Lysobacteraceae Christensen and Cook 1978 (Approved Lists 1980) and order name Lysobacteriales Christensen and Cook 1978 (Approved Lists 1980) with respect to the classification of the corresponding type genera Solibacter Zhou et al. 2008, Nevskia Famintzin 1892 (Approved Lists 1980) and Lysobacter Christensen and Cook 1978 (Approved Lists 1980) and importance of accurately expressing the link between a taxonomic name, its authors and the corresponding description/circumscription/emendation International journal of systematic and evolutionary microbiology 64 (Pt 1) :293-297.

http://www.ncbi.nlm.nih.gov/pubmed/24408949

2014 Spring,S. ( 2014 ) Function and Evolution of the Sox Multienzyme Complex in the Marine Gammaproteobacterium Congregibacter litoralis ISRN microbiology 2014 :597418.

http://www.ncbi.nlm.nih.gov/pubmed/25006520

2014 Selbmann,L., Turchetti,B., Yurkov,A., Cecchini,C., Zucconi,L., Isola,D., Buzzini,P., Onofri,S. ( 2014 ) Description of Taphrina antarctica f.a. sp. nov., a new anamorphic ascomycetous yeast species associated with Antarctic endolithic microbial communities and transfer of four Lalaria species in the genus Taphrina Extremophiles : life under extreme conditions 18 (4) :707-721.

http://www.ncbi.nlm.nih.gov/pubmed/24893860

2014 Sahin,N., Veyisoglu,A., Tatar,D., Spröer,C., Cetin,D., Guven,K., Klenk,H.P. ( 2014 ) Pseudonocardia cypriaca sp. nov., Pseudonocardia salamisensis sp. nov., Pseudonocardia hierapolitana sp. nov. and Pseudonocardia kujensis sp. nov., isolated from soil International journal of systematic and evolutionary microbiology 64 (Pt 5) :1703-1711.

http://www.ncbi.nlm.nih.gov/pubmed/24523445

2013 Tortoli,E., Gitti,Z., Klenk,H.P., Lauria,S., Mannino,R., Mantegani,P., Mariottini,A., Neonakis,I. ( 2013 ) Survey of 150 strains belonging to the Mycobacterium terrae complex and description of Mycobacterium engbaekii sp. nov., Mycobacterium heraklionense sp. nov. and Mycobacterium longobardum sp. nov Int J Syst Evol Microbiol 63 (Pt 2) :401-11.

http://www.ncbi.nlm.nih.gov/pubmed/22447702
2013 Riedel,T., Gomez-Consarnau,L., Tomasch,J., Martin,M., Jarek,M., Gonzalez,J.M., Spring,S., Rohlfs,M., Brinkhoff,T., Cypionka,H., Goker,M., Fiebig,A., Klein,J., Goesmann,A., Fuhrman,J.A., Wagner-Dobler,I. ( 2013 ) Genomics and physiology of a marine flavobacterium encoding a proteorhodopsin and a xanthorhodopsin-like protein PLoS One 8 (3) :e57487.

http://www.ncbi.nlm.nih.gov/pubmed/23526944
2013 Yarza,P., Sproer,C., Swiderski,J., Mrotzek,N., Spring,S., Tindall,B.J., Gronow,S., Pukall,R., Klenk,H.P., Lang,E., Verbarg,S., Crouch,A., Lilburn,T., Beck,B., Unosson,C., Cardew,S., Moore,E.R., Gomila,M., Nakagawa,Y., Janssens,D., DeVos,P., Peiren,J., Suttels,T., Clermont,D., Bizet,C., Sakamoto,M., Iida,T., Kudo,T., Kosako,Y., Oshida,Y., Ohkuma,M., D,R.A., Spieck,E., PommereningRoeser,A., Figge,M., Park,D., Buchanan,P., Cifuentes,A., Munoz,R., Euzeby,J.P., Schleifer,K.H., Ludwig,W., Amann,R., Glockner,F.O., Rossello-Mora,R. ( 2013 ) Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names Syst Appl Microbiol 36 (1) :69-73.

http://www.ncbi.nlm.nih.gov/pubmed/23410935
2013 Verma,P., Seong,C.N., Pandey,P.K., Bhonde,R.R., Sproer,C., Rohde,M., Shouche,Y.S. ( 2013 ) Bhargavaea indica sp. nov., a member of the phylum Firmicutes, isolated from Arabian Sea sediment J Microbiol 51 (1) :36-42.

http://www.ncbi.nlm.nih.gov/pubmed/23456710
2013 Schumann,P., Pukall,R., Sproer,C., Stackebrandt,E. ( 2013 ) Reclassification of Koreibacter algae as a later heterotypic synonym of Paraoerskovia marina and emended descriptions of the genus Paraoerskovia Khan et al. 2009 and of Paraoerskovia marina Khan et al. 2009 Int J Syst Evol Microbiol 63 (Pt 1) :219-23.

http://www.ncbi.nlm.nih.gov/pubmed/22389283
2013 Montero-Calasanz,M.D., Goker,M., Potter,G., Rohde,M., Sproer,C., Schumann,P., Gorbushina,A.A., Klenk,H.P. ( 2013 ) Geodermatophilus normandii sp. nov., isolated from Saharan desert sand Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23543496
2013 Mohammadipanah,F., Hamedi,J., Goker,M., Fiebig,A., Pukall,R., Sproer,C., Klenk,H.P. ( 2013 ) Kribbella shirazensis sp. nov., isolated from soil of Shiraz in Iran Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23524355
2013 Meklat,A., Bouras,N., Zitouni,A., Mathieu,F., Lebrihi,A., Schumann,P., Sproer,C., Klenk,H.P., Sabaou,N. ( 2013 ) Actinopolyspora saharensis sp. nov., a novel halophilic actinomycete isolated from a Saharan soil of Algeria Antonie Van Leeuwenhoek 103 (4) :771-776.

http://www.ncbi.nlm.nih.gov/pubmed/23196893
2013 Lang,E., Schumann,P., Adler,S., Sproer,C., Sahin,N. ( 2013 ) Azorhizobium oxalatiphilum sp. nov., and emended description of the genus Azorhizobium Int J Syst Evol Microbiol 63 (Pt 4) :1505-1511.

http://www.ncbi.nlm.nih.gov/pubmed/22888185
2013 Gaboyer,F., Tindall,B.J., Ciobanu,M.C., Duthoit,F., LeRomancer,M., Alain,K. ( 2013 ) Phaeobacter leonis sp. nov., a novel alphaproteobacterium from Mediterranean Sea sediments Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23475346
2013 Fiebig,A., Pradella,S., Petersen,J., Päuker,O., Michael,V., Lünsdorf,H., Göker,M., Klenk,H.-P., Wagner-Döbler,I. ( 2013 ) Genome of the R-body producing marine alphaproteobacterium Labrenzia alexandrii type strain (DFL-11T) Stand Genomic Sci 7 :413-426.

2013 Fiebig,A., Pradella,S., Petersen,J., Michael,V., Päuker,O., Rohde,M., Göker,M., Klenk,H.-P., Wagner-Döbler,I. ( 2013 ) Genome of the marine alphaproteobacterium Hoeflea phototrophica type strain (DFL-43T) Stand Genomic Sci 7 :440-448.

2013 Carro,L., Pukall,R., Spröer,C., Kroppenstedt,R.M., Trujillo,M.E. ( 2013 ) Micromonospora halotolerans sp. nov., isolated from the rhizosphere of a Pisum sativum plant Antonie Van Leeuwenhoek. 103 (6) :1245-1254.

http://www.ncbi.nlm.nih.gov/pubmed/23494330
2013 Makonde,H.M., Boga,H.I., Osiemo,Z., Mwirichia,R., Stielow,J.B., Göker,M., Klenk,H.-P. ( 2013 ) Diversity of termitomyces associated with fungus-farming termites assessed by cultural and culture-independent methods. PLoS One 8 (2) :e56464.

http://www.ncbi.nlm.nih.gov/pubmed/23437139
2013 Meier-Kolthoff,J.P., Auch,A.F., Klenk,H.-P., Göker,M. ( 2013 ) Genome sequence-based species delimitation with confidence intervals and improved distance functions BMC Bioinformatics 14 (1) :60.

http://www.ncbi.nlm.nih.gov/pubmed/23432962
2013 Montero-Calasanz,M.C., Göker,M., Broughton,W.J., Cattaneo,A., Favet,J., Pötter,G., Rohde,M., Spröer,C., Schumann,P., Klenk,H.-P., Gorbushina,A.A. ( 2013 ) Geodermatophilus tzadiensis sp. nov., a UV radiation-resistant bacterium isolated from sand of the Saharan desert Syst Appl Microbiol 36 (3) :177-182.

http://www.ncbi.nlm.nih.gov/pubmed/23415483
2013 Montero-Calasanz,M.C., Göker,M., Pötter,G., Rohde,M., Spröer,C., Schumann,P., Gorbushina,A.A., Klenk,H.P. ( 2013 ) Geodermatophilus saharensis sp. nov., isolated from sand of the Saharan desert in Chad Arch Microbiol 195 (3) :153-159.

http://www.ncbi.nlm.nih.gov/pubmed/23269498
2013 Montero-Calasanz,M.C., Göker,M., Rohde,M., Schumann,P., Pötter,G., Spröer,C., Gorbushina,A.A., Klenk,H.-P. ( 2013 ) Geodermatophilus siccatus sp. nov., isolated from arid sand of the Saharan desert in Chad. Antonie Van Leeuwenhoek 103 (3) :449-456.

http://www.ncbi.nlm.nih.gov/pubmed/23076796
2013 Petersen,J., Frank,O., Göker,M., Pradella,S. ( 2013 ) Extrachromosomal, extraordinary and essential-the plasmids of the Roseobacter clade. Appl Microbiol Biotechnol. 97 (7) :2805-2815.

http://www.ncbi.nlm.nih.gov/pubmed/23435940
2013 Hanafy,M.S., El-Banna,A., Schumacher,H.M., Jacobsen,H.J., Hassan,F.S. ( 2013 ) Enhanced tolerance to drought and salt stresses in transgenic faba bean (Vicia faba L.) plants by heterologous expression of the PR10a gene from potato Plant Cell Rep 32 (5) :663-74.

http://www.ncbi.nlm.nih.gov/pubmed/23455709
2013 Foesel,B.U., Nagele,V., Naether,A., Wust,P.K., Weinert,J., Bonkowski,M., Lohaus,G., Polle,A., Alt,F., Oelmann,Y., Fischer,M., Friedrich,M.W., Overmann,J. ( 2013 ) Determinants of Acidobacteria activity inferred from the relative abundances of 16S rRNA transcripts in German grassland and forest soils Environ Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23802854
2013 Camas,M., Sazak,A., Spröer,C., Klenk,H.P., Cetin,D., Guven,K., Sahin,N. ( 2013 ) Nonomuraea jabiensis sp. nov., isolated from arid soil Int J Syst Evol Microbiol 63 (Pt 1) :212-218.

http://www.ncbi.nlm.nih.gov/pubmed/22389281
2013 Liolios,K., Abt,B., Scheuner,C., Teshima,H., Held,B., Lapidus,A., Nolan,M., Lucas,S., Deshpande,S., Cheng,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Rohde,M., Tindall,B.J., Detter,J.C., Göker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Woyke,T., Klenk,H.-P., Kyrpides,N.C. ( 2013 ) Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692T) from the alkaline Lake Magadi in the East African Rift. Stand Genomic Sci 7 :165-176.

2013 Abt,B., Göker,M., Scheuner,C., Han,C., Lu,M., Misra,M., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Chang,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Jeffries,C.D., Rohde,M., Spring,S., Gronow,S., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Woyke,T., Klenk,H.-P. ( 2013 ) Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema. Stand Genomic Sci 8 :88-105.

2013 Foesel,B.U., Rohde,M., Overmann,J. ( 2013 ) Blastocatella fastidiosa gen. nov., sp. nov., isolated from semiarid savanna soil - the first described species of Acidobacteria subdivision 4 Syst Appl Microbiol 36 (2) :82-89.

http://www.ncbi.nlm.nih.gov/pubmed/23266188
2013 Camas,M., Sazak,A., Sproer,C., Klenk,H.P., Cetin,D., Guven,K., Sahin,N. ( 2013 ) Nonomuraea jabiensis sp. nov., isolated from arid soil Int J Syst Evol Microbiol 63 (Pt 1) :212-218.

http://www.ncbi.nlm.nih.gov/pubmed/22389281
2013 Hahnke,S., Tindall,B.J., Schumann,P., Simon,M., Brinkhoff,T. ( 2013 ) Pelagimonas varians gen. nov., sp. nov., isolated from the southern North Sea Int J Syst Evol Microbiol 63 (Pt 3) :835-843.

http://www.ncbi.nlm.nih.gov/pubmed/22611199
2013 Chen,H., Jogler,M., Tindall,B.J., Klenk,H.P., Rohde,M., Busse,H.J., Overmann,J. ( 2013 ) Sphingomonas starnbergensis sp. nov., isolated from a prealpine freshwater lake Int J Syst Evol Microbiol 63 (Pt 3) :1017-1023.

http://www.ncbi.nlm.nih.gov/pubmed/22685105
2013 Camas,M., Sahin,N., Sazak,A., Sproer,C., Klenk,H.P. ( 2013 ) Amycolatopsis magusensis sp. nov., isolated from soil Int J Syst Evol Microbiol 63 (Pt 4) :1254-1260.

http://www.ncbi.nlm.nih.gov/pubmed/22771685
2013 Ziegler,S., Waidner,B., Itoh,T., Schumann,P., Spring,S., Gescher,J. ( 2013 ) Metallibacterium scheffleri gen. nov., sp. nov., an alkalinizing gammaproteobacterium isolated from an acidic biofilm Int J Syst Evol Microbiol 63 (Pt 4) :1499-504.

http://www.ncbi.nlm.nih.gov/pubmed/22863988
2013 Penesyan,A., Breider,S., Schumann,P., Tindall,B.J., Egan,S., Brinkhoff,T. ( 2013 ) Epibacterium ulvae gen. nov., sp. nov., epibiotic bacteria isolated from the surface of a marine alga Int J Syst Evol Microbiol 63 (Pt 5) :1589-96.

http://www.ncbi.nlm.nih.gov/pubmed/22904216
2013 Boubetra,D., Zitouni,A., Bouras,N., Mathieu,F., Lebrihi,A., Schumann,P., Sproer,C., Klenk,H.P., Sabaou,N. ( 2013 ) Saccharothrix hoggarensis sp. nov., an actinomycete isolated from Saharan soil Int J Syst Evol Microbiol 63 (Pt 2) :549-453.

http://www.ncbi.nlm.nih.gov/pubmed/22523169
2013 Jogler,M., Chen,H., Simon,J., Rohde,M., Busse,H.J., Klenk,H.P., Tindall,B.J., Overmann,J. ( 2013 ) Description of Sphingorhabdus planktonica gen. nov., sp. nov. and reclassification of three related members of the genus Sphingopyxis in the genus Sphingorhabdus gen. nov Int J Syst Evol Microbiol 63 (Pt 4) :1342-1349.

http://www.ncbi.nlm.nih.gov/pubmed/22798658
2013 Vaas,L.A., Sikorski,J., Hofner,B., Fiebig,A., Buddruhs,N., Klenk,H.P., Göker,M. ( 2013 ) opm: an R package for analysing OmniLog(R) phenotype microarray data Bioinformatics

http://www.ncbi.nlm.nih.gov/pubmed/23740744
2013 Boubetra,D., Zitouni,A., Bouras,N., Mathieu,F., Lebrihi,A., Schumann,P., Spröer,C., Klenk,H.P., Sabaou,N. ( 2013 ) Saccharothrix saharensis sp. nov., a novel actinomycete isolated from Algerian Saharan soil Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23645017
2013 Ezeoke,I., Klenk,H.P., Pötter,G., Schumann,P., Moser,B.D., Lasker,B.A., Nicholson,A., Brown,J.M. ( 2013 ) Nocardia amikacinitolerans sp. nov., an amikacin-resistant human pathogen Int J Syst Evol Microbiol 63 (Pt 3) :1056-1061.

http://www.ncbi.nlm.nih.gov/pubmed/22707533
2013 Montero-Calasanz,M.D., Göker,M., Pötter,G., Rohde,M., Spröer,C., Schumann,P., Gorbushina,A.A., Klenk,H.P. ( 2013 ) Geodermatophilus africanus sp. nov., a halotolerant actinomycete isolated from Saharan desert sand Antonie Van Leeuwenhoek

http://www.ncbi.nlm.nih.gov/pubmed/23723018
2013 Meklat,A., Bouras,N., Zitouni,A., Mathieu,F., Lebrihi,A., Schumann,P., Spröer,C., Klenk,H.P., Sabaou,N. ( 2013 ) Actinopolyspora righensis sp. nov., a novel halophilic actinomycete isolated from Saharan soil in Algeria Antonie Van Leeuwenhoek

http://www.ncbi.nlm.nih.gov/pubmed/23754661
2013 Spring,S., Riedel,T., Spröer,C., Yan,S., Harder,J., Fuchs,B.M. ( 2013 ) Taxonomy and evolution of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria: description of Luminiphilus syltensis gen. nov., sp. nov., reclassification of Haliea rubra as Pseudohaliea rubra gen. nov., comb. nov., and emendation of Chromatocurvus halotolerans BMC Microbiol 13 :118.

http://www.ncbi.nlm.nih.gov/pubmed/23705883
2013 Meier-Kolthoff,J.P., Göker,M., Spröer,C., Klenk,H.P. ( 2013 ) When should a DDH experiment be mandatory in microbial taxonomy? Arch Microbiol 195 (6) :413-8.

http://www.ncbi.nlm.nih.gov/pubmed/23591456
2013 Brack,C., Mikolasch,A., Pukall,R., Schumann,P., Köster,M., Schauer,F. ( 2013 ) Bacteriolytic Bacillus species isolated from brackish waters of the Southern Baltic Sea Mar Biol

2013 Rohde,C., Smith,D., Martin,D., Fritze,D., Stalpers,J. ( 2013 ) Code of Conduct on Biosecurity for Biological Resource Centres (BRCs) - Procedural implementation Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23667143
2013 Meklat,A., Bouras,N., Zitouni,A., Mathieu,F., Lebrihi,A., Schumann,P., Sproer,C., Klenk,H.P., Sabaou,N. ( 2013 ) Actinopolyspora mzabensis sp. nov., a novel halophilic actinomycete isolated from a Saharan soil of Algeria Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23667146
2013 Spring,S., Riedel,T. ( 2013 ) Mixotrophic growth of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria is carbon-starvation independent and correlates with the type of carbon source and oxygen availability BMC Microbiol 13 :117.

http://www.ncbi.nlm.nih.gov/pubmed/23705861
2013 Li,H.W., Zhi,X.Y., Yao,J.C., Zhou,Y., Tang,S.K., Klenk,H.P., Zhao,J., Li,W.J. ( 2013 ) Comparative genomic analysis of the genus Nocardiopsis provides new insights into its genetic mechanisms of environmental adaptability PLoS One 8 (4) :e61528.

http://www.ncbi.nlm.nih.gov/pubmed/23626695
2013 Hernandez-Sanchez,V., Lang,E., Wittich,R.M. ( 2013 ) The Three-Species Consortium of Genetically Improved Strains Cupriavidus necator RW112, Burkholderia xenovorans RW118, and Pseudomonas pseudoalcaligenes RW120 Grows with Technical Polychlorobiphenyl, Aroclor 1242 Front Microbiol 4 :90.

http://www.ncbi.nlm.nih.gov/pubmed/23658554
2013 Cheng,J., Chen,W., Huo-Zhang,B., Nimaichand,S., Zhou,E.M., Lu,X.H., Klenk,H.P., Li,W.J. ( 2013 ) Microlunatus cavernae sp. nov., a novel actinobacterium isolated from Alu ancient cave, Yunnan, south-west China Antonie Van Leeuwenhoek 104 (1) :95-101.

http://www.ncbi.nlm.nih.gov/pubmed/23653120
2013 Smith,S., Fritze,D., Stackebrandt,E. ( 2013 ) Public Service Collections and Biological Resource Centers of Microorganisms The Prokaryotes :267-304.

2013 Göker,M., Klenk,H.-P. ( 2013 ) Phylogeny-driven target selection for genome-sequencing (and other) projects Stand Genomic Sci 8 :360-374.

2013 Stackebrandt,E., Chertkov,O., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.-F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Pan,C., Rohde,M., Gronow,S., Göker,M., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Woyke,T., Kyrpides,N.C., Klenk,H.-P. ( 2013 ) Complete genome sequence of the free-living aerobic spirochete Turneriella parva type strain (HT) Stand Genomic Sci 8 :228-238.

2013 Huntemann,M., Stackebrandt,E., Held,B., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Rohde,M., Gronow,S., Göker,M., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Woyke,T., Hugenholtz,P., Kyrpides,N.C., Klenk,H.-P., Lapidus,A. ( 2013 ) Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055T) Stand Genomic Sci 8 :177-187.

2013 Visser,M., Worm,P., Muyzer,G., Pereira,I.A.C., Schaap,P.J., Plugge,C.M., Kuever,J., Parshina,S.N., Nazina,T.N., Ivanova,A.E., Bernier-Latmani,R., Goodwin,L.A., Kyrpides,N.C., Woyke,T., Chain,P., Davenport,K.W., Spring,S., Klenk,H.-P., Stams,A. ( 2013 ) Genome analysis of Desulfotomaculum kuznetsovii strain 17T reveals a physiological similarity with Pelotomaculum thermopropionicum SIT Stand Genomic Sci 8 :69-87.

2013 Mavromatis,K., Stackebrandt,E., Held,B., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.-F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Rohde,M., Spring,S., Göker,M., Woyke,T., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.-P., Kyrpides,N. ( 2013 ) Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGAT). Stand Genomic Sci 8 :47-57.

2013 Stackebrandt,E., Chertkov,O., Lapidus,A., Nolan,M., Lucas,S., Han,C., Cheng,J.F., Tapia,R., Goodwin,L.A., Bruce,D., Pitluck,S., Liolios,K., Mavromatis,K., Pagani,I., Ivanova,N., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Rohde,M., Tindall,B.J., Göker,M., Woyke,T., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.-P., Kyrpides,N. ( 2013 ) High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5T) Stand Genomic Sci 8 :37-46.

2013 Mavromatis,K., Stackebrandt,E., Munk,C., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.-F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Rohde,M., Gronow,S., Göker,M., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.-P., Woyke,T. ( 2013 ) Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437T) Stand Genomic Sci 8 :26-36.

2013 Stackebrandt,E., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.-F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Chang,Y.-J., Land,M., Hauser,L., Rohde,M., Pukall,R., Göker,M., Detter,J.C., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.-P. ( 2013 ) Complete genome sequence of Coriobacterium glomerans type strain (PW2T) from the midgut of Pyrrhocoris apterus L. (red soldier bug) Stand Genomic Sci 8 :15-25.

2013 Konstantinidis,K., Stackebrandt,E. ( 2013 ) Defining taxonomic ranks. The Prokaryotes :267-304.

2013 Zhu,W.Y., Zhang,J.L., Qin,Y.L., Xiong,Z.J., Zhang,D.F., Klenk,H.P., Zhao,L.X., Xu,L.H., Li,W.J. ( 2013 ) Blastococcus endophyticus sp. nov., a novel actinobacterium isolated from Camptotheca acuminata Decne Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23475341
2012 Naether,A., Foesel,B.U., Naegele,V., Wüst,P.K., Weinert,J., Bonkowski,M., Alt,F., Oelmann,Y., Polle,A., Lohaus,G., Gockel,S., Hemp,A., Kalko,E.K., Linsenmair,K.E., Pfeiffer,S., Renner,S., Schöning,I., Weisser,W.W., Wells,K., Fischer,M., Overmann,J., Friedrich,M.W. ( 2012 ) Environmental Factors Affect Acidobacterial Communities below the Subgroup Level in Grassland and Forest Soils Appl Environ Microbiol 78 (20) :7398-7406.

http://www.ncbi.nlm.nih.gov/pubmed/22885760
2012 Vaas,L.A., Sikorski,J., Michael,V., Göker,M., Klenk,H.P. ( 2012 ) Visualization and curve-parameter estimation strategies for efficient exploration of phenotype microarray kinetics PLoS ONE 7 (4) :e34846.

http://www.ncbi.nlm.nih.gov/pubmed/22536335
2012 Montero-Calasanz,M.D., Goker,M., Potter,G., Rohde,M., Sproer,C., Schumann,P., Klenk,H.P., Gorbushina,A.A. ( 2012 ) Geodermatophilus telluris sp. nov., a novel actinomycete isolated from Saharan desert sand in Chad Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23159748
2012 Vaishampayan,P., Moissl-Eichinger,C., Pukall,R., Schumann,P., Sproer,C., Augustus,A., HaydenRoberts,A., Namba,G., Cisneros,J., Salmassi,T., Venkateswaran,K. ( 2012 ) Description of Tersicoccus phoenicis gen. nov., sp. nov. isolated from spacecraft assembly clean room environments Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23223813
2012 Setaro,S.D., Garnica,S., Herrera,P.I., Suárez,J.P., Göker,M. ( 2012 ) A clustering optimization strategy to estimate species richness of Sebacinales in the tropical Andes based on molecular sequences from distinct DNA regions Biodivers Conserv 21 (9) :2269-2285.

2012 Krishnamurthi,S., Spring,S., AnilKumar,P., Mayilraj,S., Klenk,H.P., Suresh,K. ( 2012 ) Desulfotomaculum defluvii sp. nov., a sulfate-reducing bacterium isolated from the subsurface environment of a landfill Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23159750
2012 Zhang,Y.J., Tang,S.K., Shi,R., Klenk,H.P., Chen,C., Yang,L.L., Zhou,Y., Li,W.J. ( 2012 ) Salinisphaera halophila sp. nov., a moderately halophilic bacterium isolated from brine of a salt well Int J Syst Evol Microbiol 62 (Pt 9) :2174-2179.

http://www.ncbi.nlm.nih.gov/pubmed/22058321
2012 Yang,L.L., Ao,T., Wang,X.H., He,J., Klenk,H.P., Tang,S.K., Li,W.J. ( 2012 ) Proposal of Intrasporangium mesophilum sp. nov., and reclassification of Humihabitans oryzae Kageyama et al. 2007 as Intrasporangium oryzae comb. nov. Int J Syst Evol Microbiol 62 (Pt 5) :1037-1041.

http://www.ncbi.nlm.nih.gov/pubmed/21685254
2012 Xing,K., Bian,G.K., Qin,S., Klenk,H.P., Yuan,B., Zhang,Y.J., Li,W.J., Jiang,J.H. ( 2012 ) Kibdelosporangium phytohabitans sp. nov., a novel endophytic actinomycete isolated from oil-seed plant Jatropha curcas L. containing 1-aminocyclopropane-1-carboxylic acid deaminase Antonie Van Leeuwenhoek 101 (2) :433-441.

http://www.ncbi.nlm.nih.gov/pubmed/21989686
2012 Stielow,J.B., Vaas,L.A., Göker,M., Hoffmann,P., Klenk,H.P. ( 2012 ) Charcoal filter paper improves the viability of cryopreserved filamentous ectomycorrhizal and saprotrophic Basidiomycota and Ascomycota Mycologia 104 (1) :324-330.

http://www.ncbi.nlm.nih.gov/pubmed/21914821
2012 Stielow,J.B., Bratek,Z., Klenk,H.P., Winter,S., Menzel,W. ( 2012 ) A novel mitovirus from the hypogeous ectomycorrhizal fungus Tuber excavatum Arch Virol. 157 :787-790.

http://www.ncbi.nlm.nih.gov/pubmed/22286751
2012 Stieglmeier,M., Rettberg,P., Barczyk,S., Bohmeier,M., Pukall,R., Wirth,R., Moissl-Eichinger,C. ( 2012 ) Abundance and diversity of microbial inhabitants in European spacecraft-associated clean rooms Astrobiology 12 (6) :572-585.

http://www.ncbi.nlm.nih.gov/pubmed/22794299
2012 Sazak,A., Camas,M., Spröer,C., Klenk,H.P., Sahin,N. ( 2012 ) Actinomadura geliboluensis sp. nov., isolated from soil Int J Syst Evol Microbiol 62 (Pt 8) :2011-2017.

http://www.ncbi.nlm.nih.gov/pubmed/22021584
2012 Qin,S., Jiang,J.H., Klenk,H.P., Zhu,W.Y., Zhao,G.Z., Zhao,L.X., Tang,S.K., Xu,L.H., Li,W.J. ( 2012 ) Promicromonospora xylanilytica sp. nov., an endophytic actinomycete isolated from surface-sterilized leaves of the medicinal plant Maytenus austroyunnanensis Int J Syst Evol Microbiol 62 (Pt 1) :84-89.

http://www.ncbi.nlm.nih.gov/pubmed/21335503
2012 Neupane,S., Hogberg,N., Alstrom,S., Lucas,S., Han,J., Lapidus,A., Cheng,J.F., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Han,C., Detter,J.C., Tapia,R., Fiebig,A., Land,M., Hauser,L., Kyrpides,N.C., Ivanova,N., Pagani,I., Klenk,H.P., Woyke,T., Finlay,R.D. ( 2012 ) Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9 Stand.Genomic Sci 6 (1) :54-62.

http://www.ncbi.nlm.nih.gov/pubmed/22675598
2012 Neupane,S., Finlay,R.D., Alstrom,S., Goodwin,L., Kyrpides,N.C., Lucas,S., Lapidus,A., Bruce,D., Pitluck,S., Peters,L., Ovchinnikova,G., Chertkov,O., Han,J., Han,C., Tapia,R., Detter,J.C., Land,M., Hauser,L., Cheng,J.F., Ivanova,N., Pagani,I., Klenk,H.P., Woyke,T., Hogberg,N. ( 2012 ) Complete genome sequence of Serratia plymuthica strain AS12 Stand.Genomic Sci 6 (2) :165-173.

http://www.ncbi.nlm.nih.gov/pubmed/22768360
2012 Mohammadipanah,F., Matasyoh,J., Hamedi,J., Klenk,H.P., Laatsch,H. ( 2012 ) Persipeptides A and B, two cyclic peptides from Streptomyces sp. UTMC 1154 Bioorg.Med Chem 20 (1) :335-339.

http://www.ncbi.nlm.nih.gov/pubmed/22153873
2012 Meklat,A., Bouras,N., Zitouni,A., Mathieu,F., Lebrihi,A., Schumann,P., Spröer,C., Klenk,H.P., Sabaou,N. ( 2012 ) Actinopolyspora algeriensis sp. nov., a novel halophilic actinomycete isolated from a Saharan soil Extremophiles 16 (5) :771-776.

http://www.ncbi.nlm.nih.gov/pubmed/22872369
2012 Meincke,L., Copeland,A., Lapidus,A., Lucas,S., Berry,K.W., DelRio,T.G., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Richardson,P., Bruce,D., Goodwin,L., Han,C., Tapia,R., Detter,J.C., Schmutz,J., Brettin,T., Larimer,F., Land,M., Hauser,L., Kyrpides,N.C., Ivanova,N., Göker,M., Woyke,T., Wu,Q.L., Pöckl,M., Hahn,M.W., Klenk,H.P. ( 2012 ) Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1T) Stand.Genomic Sci 6 (1) :74-83.

http://www.ncbi.nlm.nih.gov/pubmed/22675600
2012 Mavromatis,K., Chertkov,O., Lapidus,A., Nolan,M., Lucas,S., Tice,H., DelRio,T.G., Cheng,J.F., Han,C., Tapia,R., Bruce,D., Goodwin,L.A., Pitluck,S., Huntemann,M., Liolios,K., Pagani,I., Ivanova,N., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Brambilla,E.M., Rohde,M., Spring,S., Göker,M., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P., Woyke,T. ( 2012 ) Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1) Stand.Genomic Sci 6 (2) :210-219.

http://www.ncbi.nlm.nih.gov/pubmed/22768364
2012 Klenk,H.P., Lu,M., Lucas,S., Lapidus,A., Copeland,A., Pitluck,S., Goodwin,L.A., Han,C., Tapia,R., Brambilla,E.M., Pötter,G., Land,M., Ivanova,N., Rohde,M., Göker,M., Detter,J.C., Li,W.J., Kyrpides,N.C., Woyke,T. ( 2012 ) Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T) Stand.Genomic Sci 6 (2) :265-275.

http://www.ncbi.nlm.nih.gov/pubmed/22768369
2012 Klenk,H.P., Held,B., Lucas,S., Lapidus,A., Copeland,A., Hammon,N., Pitluck,S., Goodwin,L.A., Han,C., Tapia,R., Brambilla,E.M., Pötter,G., Land,M., Ivanova,N., Rohde,M., Göker,M., Detter,J.C., Kyrpides,N.C., Woyke,T. ( 2012 ) Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128T) Stand.Genomic Sci 6 (2) :220-229.

http://www.ncbi.nlm.nih.gov/pubmed/22768365
2012 Vaas,L.A., Sikorski,J., Michael,V., Göker,M., Klenk,H.P. ( 2012 ) Visualization and curve-parameter estimation strategies for efficient exploration of phenotype microarray kinetics PLoS ONE 7 (4) :e34846.

http://www.ncbi.nlm.nih.gov/pubmed/22536335
2012 Kaur,I., Das,A.P., Acharya,M., Klenk,H.P., Sree,A., Mayilraj,S. ( 2012 ) Planococcus plakortidis sp. nov., isolated from the marine sponge Plakortis simplex (Schulze) Int J Syst Evol Microbiol 62 (Pt 4) :883-889.

http://www.ncbi.nlm.nih.gov/pubmed/21642486
2012 Vaas,L.A., Marheine,M., Seufert,S., Schumacher,H.M., Kiesecker,H., Heine-Dobbernack,E. ( 2012 ) Impact of pr-10a overexpression on the cryopreservation success of Solanum tuberosum suspension cultures Plant Cell Rep 31 (6) :1061-1071.

http://www.ncbi.nlm.nih.gov/pubmed/22252543
2012 Huntemann,M., Teshima,H., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Pan,C., Brambilla,E.M., Rohde,M., Spring,S., Göker,M., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P., Woyke,T. ( 2012 ) Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1T) Stand.Genomic Sci 6 (2) :185-193.

http://www.ncbi.nlm.nih.gov/pubmed/22768362
2012 Stielow,J.B., Vaas,L.A., Göker,M., Hoffmann,P., Klenk,H.P. ( 2012 ) Charcoal filter paper improves the viability of cryopreserved filamentous ectomycorrhizal and saprotrophic Basidiomycota and Ascomycota Mycologia 104 (1) :324-330.

http://www.ncbi.nlm.nih.gov/pubmed/21914821
2012 Horneck,G., Moeller,R., Cadet,J., Douki,T., Mancinelli,R.L., Nicholson,W.L., Panitz,C., Rabbow,E., Rettberg,P., Spry,A., Stackebrandt,E., Vaishampayan,P., Venkateswaran,K.J. ( 2012 ) Resistance of bacterial endospores to outer space for planetary protection purposes-experiment PROTECT of the EXPOSE-E mission Astrobiology 12 (5) :445-456.

http://www.ncbi.nlm.nih.gov/pubmed/22680691
2012 Han,C., Kotsyurbenko,O., Chertkov,O., Held,B., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brambilla,E.M., Rohde,M., Spring,S., Sikorski,J., Göker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P., Detter,J.C. ( 2012 ) Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1T) Stand.Genomic Sci 6 (1) :94-103.

http://www.ncbi.nlm.nih.gov/pubmed/22675602
2012 Hahnke,S., Tindall,B.J., Schumann,P., Sperling,M., Brinkhoff,T., Simon,M. ( 2012 ) Planktotalea frisia gen. nov., sp. nov., isolated from the southern North Sea Int J Syst Evol Microbiol 62 (Pt 7) :1619-1624.

http://www.ncbi.nlm.nih.gov/pubmed/21890723
2012 Hahn,M.W., Minasyan,A., Lang,E., Koll,U., Spröer,C. ( 2012 ) Polynucleobacter difficilis sp. nov., a planktonic freshwater bacterium affiliated with subcluster B1 of the genus Polynucleobacter Int J Syst Evol Microbiol 62 (Pt 2) :376-383.

http://www.ncbi.nlm.nih.gov/pubmed/21441373
2012 Göker,M., Saunders,E., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.F., Han,C., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Mavromatis,K., Pagani,I., Ivanova,N., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Chang,Y.J., Jeffries,C.D., Brambilla,E.M., Rohde,M., Spring,S., Detter,J.C., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. ( 2012 ) Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T) Stand.Genomic Sci 6 (2) :230-239.

http://www.ncbi.nlm.nih.gov/pubmed/22768366
2012 Endo,A., Futagawa-Endo,Y., Schumann,P., Pukall,R., Dicks,L.M. ( 2012 ) Bifidobacterium reuteri sp. nov., Bifidobacterium callitrichos sp. nov., Bifidobacterium saguini sp. nov., Bifidobacterium stellenboschense sp. nov. and Bifidobacterium biavatii sp. nov. isolated from faeces of common marmoset (Callithrix jacchus) and red-handed tamarin (Saguinus midas) Syst Appl Microbiol 35 (2) :92-97.

http://www.ncbi.nlm.nih.gov/pubmed/22225994