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Publications of the DSMZ

Here you will find a complete list of all scientific publications.

Publications
2017 Shang,Y., Sikorski,J., Bonkowski,M., Fiore-Donno,A.-M., Kandeler,E., Marhan,S., Boeddinghaus,R.S., Solly,E.F., Schrumpf,M., Schöning,I., Wubet,T., Buscot,F., Overmann,J. ( 2017 ) Inferring interactions in complex microbial communities from nucleotide sequence data and environmental parameters PLOS ONE 12 (3) :e0173765.

http://dx.doi.org/10.1371%2Fjournal.pone.0173765
2017 Afouda,L.A.C., Kone,D., Zinsou,V., Dossou,L., Kenyon,L., Winter,S., Knierim,D. ( 2017 ) Virus surveys of Capsicum spp. in the Republic of Benin reveal the prevalence of pepper vein yellows virus and the identification of a previously uncharacterised polerovirus species Archives of Virology

2017 Menzel,W., Winter,S. ( 2017 ) First report of Mint vein banding-associated virus infecting Mentha × gracilis in Germany New Disease Reports 35 :9.

2017 Roenhorst,J.W., Lacomme,C., Nisbet,C., Leichtfried,T., Menzel,W., Winter,S., vanderVlug,R.A.A. ( 2017 ) Euphresco project VirusCollect - fulfilling the need for a common collection of plant viruses and viroids for reference EPPO Bulletin :1-7.

2017 Knierim,D., Menzel,W., Winter,S. ( 2017 ) Analysis of the complete genome sequence of euphorbia ringspot virus, an atypical member of the genus Potyvirus Archives of Virology 162 :291-293.

2017 Markowetz,F. ( 2017 ) All biology is computational biology PLOS Biology 15 (3) :e2002050.

http://dx.doi.org/10.1371%2Fjournal.pbio.2002050
2017 Starnawski,P., Bataillon,T., Ettema,T.J.G., Jochum,L.M., Schreiber,L., Chen,X., Lever,M.A., Polz,M.F., Jørgensen,B.B., Schramm,A., Kjeldsen,K.U. ( 2017 ) Microbial community assembly and evolution in subseafloor sediment Proceedings of the National Academy of Sciences 114 (11) :2940-2945.

http://www.pnas.org/content/114/11/2940.abstract
2017 Ruf,A., Kanawati,B., Hertkorn,N., Yin,Q.-Z., Moritz,F., Harir,M., Lucio,M., Michalke,B., Wimpenny,J., Shilobreeva,S., Bronsky,B., Saraykin,V., Gabelica,Z., Gougeon,R.D., Quirico,E., Ralew,S., Jakubowski,T., Haack,H., Gonsior,M., Jenniskens,P., Hinman,N.W., Schmitt-Kopplin,P. ( 2017 ) Previously unknown class of metalorganic compounds revealed in meteorites Proceedings of the National Academy of Sciences 114 (11) :2819-2824.

http://www.pnas.org/content/114/11/2819.abstract
2017 vanIngen,J., Kohl,T.A., Kranzer,K., Hasse,B., Keller,P., Szafranska,A.K., Hilleman,D., Chand,M., Schreiber,P.W., Sommerstein,R., Berger,C., Genoni,M., Rüegg,C., Troillet,N., Widmer,A.F., Becker,S., Herrmann,M., Eckmanns,T., Haller,S., Höller,C., Debast,S.B., Wolfhagen,M.J., Hopman,J., Kluytmans,J., Langelaar,M., Notermans,D.W., tenOever,J., vandenBaarselaar,P., Vonk,A.B., Vos,M.C., Ahmed,N., Brown,T., Crook,D., Lamagni,T., Phin,N., Smith,G., Zambon,M., Serr,A., Götting,T., Ebner,W., Thürmer,A., Utpatel,C., Spröer,C., Bunk,B., Nübel,U., Bloemberg,G.V., Böttger,E.C., Niemann,S., Wagner,D., Sax,H. ( 2017 ) A global outbreak of severe Mycobacterium chimaera disease after cardiac surgery: a molecular epidemiological study The Lancet Infectious Diseases in press

2017 Steglich,M., Nübel,U. ( 2017 ) The challenge of detecting indels in bacterial genomes from short-read sequencing data J. Biotechnol. 250 :11-15.

2017 Nagel,S., Pommerenke,C., Scherr,M., Meyer,C., Kaufmann,M., Battmer,K., MacLeod,R.A., Drexler,H.G. ( 2017 ) NKL homeobox gene activities in hematopoietic stem cells, T-cell development and T-cell leukemia PLoS One 12 (2) :e0171164.

https://www.ncbi.nlm.nih.gov/pubmed/28151996
2017 Drexler,H.G., Dirks,W.G., MacLeod,R.A., Uphoff,C.C. ( 2017 ) False and mycoplasma-contaminated leukemia-lymphoma cell lines: time for a reappraisal Int J Cancer 140 (5) :1209-1214.

https://www.ncbi.nlm.nih.gov/pubmed/27870004
2017 Palau,A., Mallo,M., Palomo,L., Rodriguez-Hernandez,I., Diesch,J., Campos,D., Granada,I., Junca,J., Drexler,H.G., Sole,F., Buschbeck,M. ( 2017 ) Immunophenotypic, cytogenetic, and mutational characterization of cell lines derived from myelodysplastic syndrome patients after progression to acute myeloid leukemia Genes Chromosomes Cancer 56 (3) :243-252.

https://www.ncbi.nlm.nih.gov/pubmed/27750403
2017 MacLeod,R.A., Kaufmann,M.E., Drexler,H.G. ( 2017 ) Cytogenetic Harvesting of Cancer Cells and Cell Lines Methods Mol Biol 1541 :43-58.

https://www.ncbi.nlm.nih.gov/pubmed/27910013
2016 Wüst,P.K., Foesel,B.U., Geppert,A., Huber,K.J., Luckner,M., Wanner,G., Overmann,J. ( 2016 ) Brevitalea aridisoli, B. deliciosa, and Arenimicrobium luteum, three novel species of Acidobacteria subdivision 4 (class Blastocatellia) isolated from Namibian savanna soil and description of the novel family Pyrinomonadaceae Int J Syst Evol Microbiol

2016 Huber,K.J., Geppert,A.M., Wanner,G., Fosel,B.U., Wust,P.K., Overmann,J. ( 2016 ) Vicinamibacter silvestris - The first representative of the globally widespread subdivision 6 Acidobacteria isolated from subtropical savannah soil Int J Syst Evol Microbiol

2016 Soliveres,S., Manning,P., Prati,D., Gossner,M.M., Alt,F., Arndt,H., Baumgartner,V., Binkenstein,J., Birkhofer,K., Blaser,S., Bluthgen,N., Boch,S., Bohm,S., Borschig,C., Buscot,F., Diekotter,T., Heinze,J., Holzel,N., Jung,K., Klaus,V.H., Klein,A.M., Kleinebecker,T., Klemmer,S., Krauss,J., Lange,M., Morris,E.K., Muller,J., Oelmann,Y., Overmann,J., Pasalic,E., Renner,S.C., Rillig,M.C., Schaefer,H.M., Schloter,M., Schmitt,B., Schoning,I., Schrumpf,M., Sikorski,J., Socher,S.A., Solly,E.F., Sonnemann,I., Sorkau,E., Steckel,J., Steffan-Dewenter,I., Stempfhuber,B., Tschapka,M., Turke,M., Venter,P., Weiner,C.N., Weisser,W.W., Werner,M., Westphal,C., Wilcke,W., Wolters,V., Wubet,T., Wurst,S., Fischer,M., Allan,E. ( 2016 ) Locally rare species influence grassland ecosystem multifunctionality Philos Trans R Soc Lond B Biol Sci 371 (1694)

http://www.ncbi.nlm.nih.gov/pubmed/27114572
2016 Stempfhuber,B., Richter-Heitmann,T., Regan,K.M., Kölbl,A., Kaul,P., Marhan,S., Sikorski,J., Overmann,J., Friedrich,M.W., Kandeler,E., Schloter,M. ( 2016 ) Spatial interaction of archaeal ammonia-oxidizers and nitrite-oxidizing bacteria in an unfertilized grassland soil Frontiers in Microbiology 6

http://www.frontiersin.org/Journal/Abstract.aspx?s=1102&name=terrestrial_microbiology&ART_DOI=10.3389/fmicb.2015.01567
2016 Wüst,P.K., Nacke,H., Kaiser,K., Marhan,S., Sikorski,J., Kandeler,E., Daniel,R., Overmann,J. ( 2016 ) Estimates of the bacterial ribosome content and diversity in soils are significantly affected by different nucleic acid extraction methods Applied and Environmental Microbiology doi: 10.1128/AEM.00019-16

http://aem.asm.org/content/early/2016/02/15/AEM.00019-16.abstract
2016 Menzel,W., Winter,S., Hamacher,J. ( 2016 ) First report of Eggplant mottled dwarf virus causing flower breaking and vein clearing in Hydrangea macrophylla in Germany New Disease Reports 34 :11.

2016 Reynard,J.S., Schumacher,S., Menzel,W., Fuchs,J., Bohnert,P., Gasa,M., Wetzel,T., Fuchs,R. ( 2016 ) First Report of Grapevine Pinot gris virus in German vineyards Plant Disease 100 (12) :2545.

2016 Khatabi,B., Arikit,S., Xia,R., Winter,S., Oumar,D., Mongomake,K., Meyers,B.C., Fondong,V.N. ( 2016 ) High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs BMC Genomics 17 :85.

2016 Richter,K.S., Götz,M., Winter,S., Jeske,H. ( 2016 ) The contribution of translesion synthesis polymerases on geminiviral replication Virology 488 :137-148.

2016 Naseem,S., Winter,S. ( 2016 ) Quantification of African cassava mosaic virus (ACMV) and East African cassava mosaic virus (EACMV-UG) in single and mixed infected Cassava (Manihot esculenta Crantz) using quantitative PCR Journal of Virological Methods 222 :23-32.

2016 Yurkov,A.M., Rohl,O., Pontes,A., Carvalho,C., Maldonado,C., Sampaio,J.P. ( 2016 ) Local climatic conditions constrain soil yeast diversity patterns in Mediterranean forests, woodlands and scrub biome FEMS Yeast Res 16 (1)

http://www.ncbi.nlm.nih.gov/pubmed/26568202
2016 Nübel,U. ( 2016 ) Emergence and spread of antimicrobial resistance: recent insights from bacterial population genomics Current Topics in Microbiology and Immunology 398 :35-53.

http://dx.doi.org/10.1007/82_2016_505
2016 Becker,L., Steglich,M., Fuchs,S., Werner,G., Nübel,U. ( 2016 ) Comparison of six commercial kits to extract bacterial chromosome and plasmid DNA for MiSeq sequencing Sci Rep 6 :28063.

http://www.ncbi.nlm.nih.gov/pubmed/27312200
2016 Jeske,O., Surup,F., Ketteniß,M., Rast,P., Förster,B., Jogler,M., Wink,J., Jogler,C. ( 2016 ) Developing Techniques for the Utilization of Planctomycetes As Producers of Bioactive Molecules Frontiers in Microbiology 7 (1242)

http://journal.frontiersin.org/article/10.3389/fmicb.2016.01242
2016 Pesch,T., Schuhwerk,H., Wyrsch,P., Immel,T., Dirks,W., Burkle,A., Huhn,T., Beneke,S. ( 2016 ) Differential cytotoxicity induced by the Titanium(IV)Salan complex Tc52 in G2-phase independent of DNA damage BMC Cancer 16 :469.

https://www.ncbi.nlm.nih.gov/pubmed/27412346
2016 Nardone,R.M., MacLeod,R.A., Capes-Davis,A. ( 2016 ) Cancer: Authenticate new xenograft models Nature 532 (7599) :313.

https://www.ncbi.nlm.nih.gov/pubmed/27127813
2016 Mansouri,L., Noerenberg,D., Young,E., Mylonas,E., Abdulla,M., Frick,M., Asmar,F., Ljungstrom,V., Schneider,M., Yoshida,K., Skaftason,A., Pandzic,T., Gonzalez,B., Tasidou,A., Waldhueter,N., Rivas-Delgado,A., Angelopoulou,M., Ziepert,M., Arends,C.M., Couronne,L., Lenze,D., Baldus,C.D., Bastard,C., Okosun,J., Fitzgibbon,J., Dorken,B., Drexler,H.G., Roos-Weil,D., Schmitt,C.A., Munch-Petersen,H.D., Zenz,T., Hansmann,M.L., Strefford,J.C., Enblad,G., Bernard,O.A., Ralfkiaer,E., Erlanson,M., Korkolopoulou,P., Hultdin,M., Papadaki,T., Gronbaek,K., Lopez-Guillermo,A., Ogawa,S., Kuppers,R., Stamatopoulos,K., Stavroyianni,N., Kanellis,G., Rosenwald,A., Campo,E., Amini,R.M., Ott,G., Vassilakopoulos,T.P., Hummel,M., Rosenquist,R., Damm,F. ( 2016 ) Frequent NFKBIE deletions are associated with poor outcome in primary mediastinal B-cell lymphoma Blood 128 (23) :2666-2670.

https://www.ncbi.nlm.nih.gov/pubmed/27670424
2016 Quentmeier,H., Drexler,H.G., Hauer,V., MacLeod,R.A., Pommerenke,C., Uphoff,C.C., Zaborski,M., Berglund,M., Enblad,G., Amini,R.M. ( 2016 ) Diffuse Large B Cell Lymphoma Cell Line U-2946: Model for MCL1 Inhibitor Testing PLoS One 11 (12) :e0167599.

http://www.ncbi.nlm.nih.gov/pubmed/27907212
2016 Hezaveh,K., Kloetgen,A., Bernhart,S.H., Mahapatra,K.D., Lenze,D., Richter,J., Haake,A., Bergmann,A.K., Brors,B., Burkhardt,B., Claviez,A., Drexler,H.G., Eils,R., Haas,S., Hoffmann,S., Karsch,D., Klapper,W., Kleinheinz,K., Korbel,J., Kretzmer,H., Kreuz,M., Kuppers,R., Lawerenz,C., Leich,E., Loeffler,M., Mantovani-Loeffler,L., Lopez,C., McHardy,A.C., Moller,P., Rohde,M., Rosenstiel,P., Rosenwald,A., Schilhabel,M., Schlesner,M., Scholz,I., Stadler,P.F., Stilgenbauer,S., Sungalee,S., Szczepanowski,M., Trumper,L., Weniger,M.A., Siebert,R., Borkhardt,A., Hummel,M., Hoell,J.I., Project,I.M.-S. ( 2016 ) Alterations of microRNA and microRNA-regulated messenger RNA expression in germinal center B-cell lymphomas determined by integrative sequencing analysis Haematologica 101 (11) :1380-1389.

http://www.ncbi.nlm.nih.gov/pubmed/27390358
2016 Palmi,C., Savino,A.M., Silvestri,D., Bronzini,I., Cario,G., Paganin,M., Buldini,B., Galbiati,M., Muckenthaler,M.U., Bugarin,C., Mina,P.D., Nagel,S., Barisone,E., Casale,F., Locatelli,F., Nigro,L.L., Micalizzi,C., Parasole,R., Pession,A., Putti,M.C., Santoro,N., Testi,A.M., Ziino,O., Kulozik,A.E., Zimmermann,M., Schrappe,M., Villa,A., Gaipa,G., Basso,G., Biondi,A., Valsecchi,M.G., Stanulla,M., Conter,V., Kronnie,G.T., Cazzaniga,G. ( 2016 ) CRLF2 over-expression is a poor prognostic marker in children with high risk T-cell acute lymphoblastic leukemia Oncotarget

http://www.ncbi.nlm.nih.gov/pubmed/27449287
2016 Quentmeier,H., Pommerenke,C., Ammerpohl,O., Geffers,R., Hauer,V., MacLeod,R.A., Nagel,S., Romani,J., Rosati,E., Rosen,A., Uphoff,C.C., Zaborski,M., Drexler,H.G. ( 2016 ) Subclones in B-lymphoma cell lines: isogenic models for the study of gene regulation Oncotarget

http://www.ncbi.nlm.nih.gov/pubmed/27566572
2016 Kadin,M.E., Deva,A., Xu,H., Morgan,J., Khare,P., MacLeod,R.A., VanNatta,B.W., Adams,W.P.,Jr., Brody,G.S., Epstein,A.L. ( 2016 ) Biomarkers Provide Clues to Early Events in the Pathogenesis of Breast Implant-Associated Anaplastic Large Cell Lymphoma Aesthet Surg J 36 (7) :773-81.

http://www.ncbi.nlm.nih.gov/pubmed/26979456
2016 Nagel,S., Pommerenke,C., Meyer,C., Kaufmann,M., Drexler,H.G., MacLeod,R.A. ( 2016 ) Deregulation of polycomb repressor complex 1 modifier AUTS2 in T-cell leukemia Oncotarget

http://www.ncbi.nlm.nih.gov/pubmed/27322685
2016 Ehrentraut,S., Schneider,B., Nagel,S., Pommerenke,C., Quentmeier,H., Geffers,R., Feist,M., Kaufmann,M., Meyer,C., Kadin,M.E., Drexler,H.G., MacLeod,R.A. ( 2016 ) Th17 cytokine differentiation and loss of plasticity after SOCS1 inactivation in a cutaneous T-cell lymphoma Oncotarget

http://www.ncbi.nlm.nih.gov/pubmed/27144517
2016 Pommerenke,C., Hauer,V., Zaborski,M., MacLeod,R.A., Nagel,S., Amini,R.M., Berglund,M., Geffers,R., Drexler,H.G., Quentmeier,H. ( 2016 ) Chromosome 11q23 aberrations activating FOXR1 in B-cell lymphoma Blood Cancer J 6 :e433.

http://www.ncbi.nlm.nih.gov/pubmed/27284737
2016 Pommerenke,C., Geffers,R., Bunk,B., Bhuju,S., Eberth,S., Drexler,H.G., Quentmeier,H. ( 2016 ) Enhanced whole exome sequencing by higher DNA insert lengths BMC Genomics 17 (1) :399.

http://www.ncbi.nlm.nih.gov/pubmed/27225215
2016 Drexler,H.G., Eberth,S., Nagel,S., MacLeod,R.A. ( 2016 ) Malignant hematopoietic cell lines: in vitro models for double-hit B-cell lymphomas Leuk Lymphoma 57 (5) :1015-20.

http://www.ncbi.nlm.nih.gov/pubmed/26727417
2016 Veith,N., Ziehr,H., MacLeod,R.A., Reamon-Buettner,S.M. ( 2016 ) Mechanisms underlying epigenetic and transcriptional heterogeneity in Chinese hamster ovary (CHO) cell lines BMC Biotechnol 16 (1) :6.

http://www.ncbi.nlm.nih.gov/pubmed/26800878
2016 Okosun,J., Wolfson,R.L., Wang,J., Araf,S., Wilkins,L., Castellano,B.M., Escudero-Ibarz,L., AlSeraihi,A.F., Richter,J., Bernhart,S.H., Efeyan,A., Iqbal,S., Matthews,J., Clear,A., Guerra-Assuncao,J.A., Bodor,C., Quentmeier,H., Mansbridge,C., Johnson,P., Davies,A., Strefford,J.C., Packham,G., Barrans,S., Jack,A., Du,M.Q., Calaminici,M., Lister,T.A., Auer,R., Montoto,S., Gribben,J.G., Siebert,R., Chelala,C., Zoncu,R., Sabatini,D.M., Fitzgibbon,J. ( 2016 ) Recurrent mTORC1-activating RRAGC mutations in follicular lymphoma Nat Genet 48 (2) :183-8.

http://www.ncbi.nlm.nih.gov/pubmed/26691987
2016 Doijad,S., Imirzalioglu,C., Yao,Y., Pati,N.B., Falgenhauer,L., Hain,T., Foesel,B.U., Abt,B., Overmann,J., Mirambo,M.M., Mshana,S.E., Chakraborty,T. ( 2016 ) Enterobacter bugandensis sp. nov., isolated from neonatal blood International Journal of Systematic and Evolutionary Microbiology 66 (2) :968-974.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000821
2016 Foesel,B.U., Geppert,A., Rohde,M., Overmann,J. ( 2016 ) Parviterribacter kavangonensis gen. nov., sp. nov. and Parviterribacter multiflagellatus sp. nov., novel members of Parviterribacteraceae fam. nov. within the order Solirubrobacterales, and emended descriptions of the classes Thermoleophilia and Rubrobacteria and their orders and families International Journal of Systematic and Evolutionary Microbiology 66 (2) :652-665.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000770
2016 Foesel,B.U., Mayer,S., Luckner,M., Wanner,G., Rohde,M., Overmann,J. ( 2016 ) Occallatibacter riparius gen. nov., sp. nov. and Occallatibacter savannae sp. nov., acidobacteria isolated from Namibian soils, and emended description of the family Acidobacteriaceae International Journal of Systematic and Evolutionary Microbiology 66 (1) :219-229.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000700
2016 Huber,K.J., Geppert,A.M., Wanner,G., Fosel,B.U., Wust,P.K., Overmann,J. ( 2016 ) Vicinamibacter silvestris - The first representative of the globally widespread subdivision 6 Acidobacteria isolated from subtropical savannah soil Int J Syst Evol Microbiol

2016 Doijad,S., Imirzalioglu,C., Yao,Y., Pati,N.B., Falgenhauer,L., Hain,T., Foesel,B.U., Abt,B., Overmann,J., Mirambo,M.M., Mshana,S.E., Chakraborty,T. ( 2016 ) Enterobacter bugandensis sp. nov., isolated from neonatal blood International Journal of Systematic and Evolutionary Microbiology 66 (2) :968-974.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000821
2016 Lagkouvardos,I., Pukall,R., Abt,B., Foesel,B.U., Meier-Kolthoff,J.P., Kumar,N., Bresciani,A., Martínez,I., Just,S., Ziegler,C., Brugiroux,S., Garzetti,D., Wenning,M., Bui,T.P.N., Wang,J., Hugenholtz,F., Plugge,C.M., Peterson,D.A., Hornef,M.W., Baines,J.F., Smidt,H., Walter,J., Kristiansen,K., Nielsen,H.B., Haller,D., Overmann,J., Stecher,B., Clavel,T. ( 2016 ) The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota Nature Microbiology 1 :16131.

http://dx.doi.org/10.1038/nmicrobiol.2016.131
2016 Foesel,B.U., Mayer,S., Luckner,M., Wanner,G., Rohde,M., Overmann,J. ( 2016 ) Occallatibacter riparius gen. nov., sp. nov. and Occallatibacter savannae sp. nov., acidobacteria isolated from Namibian soils, and emended description of the family Acidobacteriaceae International Journal of Systematic and Evolutionary Microbiology 66 (1) :219-229.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000700
2016 Foesel,B.U., Geppert,A., Rohde,M., Overmann,J. ( 2016 ) Parviterribacter kavangonensis gen. nov., sp. nov. and Parviterribacter multiflagellatus sp. nov., novel members of Parviterribacteraceae fam. nov. within the order Solirubrobacterales, and emended descriptions of the classes Thermoleophilia and Rubrobacteria and their orders and families International Journal of Systematic and Evolutionary Microbiology 66 (2) :652-665.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000770
2016 Wüst,P.K., Foesel,B.U., Geppert,A., Huber,K.J., Luckner,M., Wanner,G., Overmann,J. ( 2016 ) Brevitalea aridisoli, B. deliciosa, and Arenimicrobium luteum, three novel species of Acidobacteria subdivision 4 (class Blastocatellia) isolated from Namibian savanna soil and description of the novel family Pyrinomonadaceae Int J Syst Evol Microbiol

2016 Sikorski,J. ( 2016 ) Schmelztiegel Bodenbakterien Biologie in unserer Zeit 46 (6) :358-365.

http://dx.doi.org/10.1002/biuz.201610607
2016 Gossner,M.M., Lewinsohn,T.M., Kahl,T., Grassein,F., Boch,S., Prati,D., Birkhofer,K., Renner,S.C., Sikorski,J., Wubet,T., Arndt,H., Baumgartner,V., Blaser,S., Blüthgen,N., Börschig,C., Buscot,F., Diekötter,T., Jorge,L.R., Jung,K., Keyel,A.C., Klein,A.-M., Klemmer,S., Krauss,J., Lange,M., Müller,J., Overmann,J., Pasalic,E., Penone,C., Perovic,D.J., Purschke,O., Schall,P., Socher,S.A., Sonnemann,I., Tschapka,M., Tscharntke,T., Türke,M., Venter,P.C., Weiner,C.N., Werner,M., Wolters,V., Wurst,S., Westphal,C., Fischer,M., Weisser,W.W., Allan,E. ( 2016 ) Land-use intensification causes multitrophic homogenization of grassland communities Nature 540 (7632) :266-269.

http://dx.doi.org/10.1038/nature20575
2016 Soliveres,S., vanderPlas,F., Manning,P., Prati,D., Gossner,M.M., Renner,S.C., Alt,F., Arndt,H., Baumgartner,V., Binkenstein,J., Birkhofer,K., Blaser,S., Blüthgen,N., Boch,S., Böhm,S., Börschig,C., Buscot,F., Diekötter,T., Heinze,J., Hölzel,N., Jung,K., Klaus,V.H., Kleinebecker,T., Klemmer,S., Krauss,J., Lange,M., Morris,E.K., Müller,J., Oelmann,Y., Overmann,J., Pasalic,E., Rillig,M.C., Schaefer,H.M., Schloter,M., Schmitt,B., Schöning,I., Schrumpf,M., Sikorski,J., Socher,S.A., Solly,E.F., Sonnemann,I., Sorkau,E., Steckel,J., Steffan-Dewenter,I., Stempfhuber,B., Tschapka,M., Türke,M., Venter,P.C., Weiner,C.N., Weisser,W.W., Werner,M., Westphal,C., Wilcke,W., Wolters,V., Wubet,T., Wurst,S., Fischer,M., Allan,E. ( 2016 ) Biodiversity at multiple trophic levels is needed for ecosystem multifunctionality Nature advance online publication

http://dx.doi.org/10.1038/nature19092
2016 Doijad,S., Imirzalioglu,C., Yao,Y., Pati,N.B., Falgenhauer,L., Hain,T., Foesel,B.U., Abt,B., Overmann,J., Mirambo,M.M., Mshana,S.E., Chakraborty,T. ( 2016 ) Enterobacter bugandensis sp. nov., isolated from neonatal blood International Journal of Systematic and Evolutionary Microbiology 66 (2) :968-974.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000821
2016 Foesel,B.U., Geppert,A., Rohde,M., Overmann,J. ( 2016 ) Parviterribacter kavangonensis gen. nov., sp. nov. and Parviterribacter multiflagellatus sp. nov., novel members of Parviterribacteraceae fam. nov. within the order Solirubrobacterales, and emended descriptions of the classes Thermoleophilia and Rubrobacteria and their orders and families International Journal of Systematic and Evolutionary Microbiology 66 (2) :652-665.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000770
2016 Foesel,B.U., Mayer,S., Luckner,M., Wanner,G., Rohde,M., Overmann,J. ( 2016 ) Occallatibacter riparius gen. nov., sp. nov. and Occallatibacter savannae sp. nov., acidobacteria isolated from Namibian soils, and emended description of the family Acidobacteriaceae International Journal of Systematic and Evolutionary Microbiology 66 (1) :219-229.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000700
2016 Lagkouvardos,I., Pukall,R., Abt,B., Foesel,B.U., Meier-Kolthoff,J.P., Kumar,N., Bresciani,A., Martínez,I., Just,S., Ziegler,C., Brugiroux,S., Garzetti,D., Wenning,M., Bui,T.P.N., Wang,J., Hugenholtz,F., Plugge,C.M., Peterson,D.A., Hornef,M.W., Baines,J.F., Smidt,H., Walter,J., Kristiansen,K., Nielsen,H.B., Haller,D., Overmann,J., Stecher,B., Clavel,T. ( 2016 ) The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota Nature Microbiology 1 :16131.

http://dx.doi.org/10.1038/nmicrobiol.2016.131
2016 Cota,I., Bunk,B., Spröer,C., Overmann,J., Konig,C., Casadesus,J. ( 2016 ) OxyR-dependent formation of DNA methylation patterns in OpvABOFF and OpvABON cell lineages of Salmonella enterica Nucleic Acids Res 44 (8) :3595-609.

2016 Zaburannyi,N., Bunk,B., Maier,J., Overmann,J., Muller,R. ( 2016 ) Genome Analysis of the Fruiting Body-Forming Myxobacterium Chondromyces crocatus Reveals High Potential for Natural Product Biosynthesis Appl Environ Microbiol 82 (6) :1945-57.

2016 Ghosh,H., Doijad,S., Bunk,B., Falgenhauer,L., Yao,Y., Sproer,C., Gentil,K., Schmiedel,J., Imirzalioglu,C., Overmann,J., Chakraborty,T. ( 2016 ) Detection of translocatable units in a blaCTX-M-15 extended-spectrum beta-lactamase-producing ST131 Escherichia coli isolate using a hybrid sequencing approach Int J Antimicrob Agents 47 (3) :245-7.

2016 Huang,S., Vieira,S., Bunk,B., Riedel,T., Spröer,C., Overmann,J. ( 2016 ) First Complete Genome Sequence of a Subdivision 6 Acidobacterium Strain Genome Announc 4 (3)

2016 Falgenhauer,L., Waezsada,S.E., Gwozdzinski,K., Ghosh,H., Doijad,S., Bunk,B., Spröer,C., Imirzalioglu,C., Seifert,H., Irrgang,A., Fischer,J., Guerra,B., Kasbohrer,A., Overmann,J., Goesmann,A., Chakraborty,T. ( 2016 ) Chromosomal Locations of mcr-1 and blaCTX-M-15 in Fluoroquinolone-Resistant Escherichia coli ST410 Emerg Infect Dis 22 (9)

2016 Crenn,K., Serpin,D., Lepleux,C., Overmann,J., Jeanthon,C. ( 2016 ) Silicimonas algicola gen. nov., sp. nov., a novel member of the Roseobacter clade isolated from the cell surface of the marine diatom Thalassiosira delicatula Int J Syst Evol Microbiol

2015 Frank,O., Goker,M., Pradella,S., Petersen,J. ( 2015 ) Ocean's Twelve: flagellar and biofilm chromids in the multipartite genome of Marinovum algicola DG898 exemplify functional compartmentalization Environ Microbiol 17 (10) :4019-4034.

http://www.ncbi.nlm.nih.gov/pubmed/26079637
2015 Foesel,B.U., Mayer,S., Luckner,M., Wanner,G., Rohde,M., Overmann,J. ( 2015 ) Occallatibacter riparius gen. nov., sp. nov. and O. savannae sp. nov. two novel acidobacterial species isolated from Namibian soils and emended description of the family Acidobacteriaceae Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/26486590
2015 Foesel,B.U., Geppert,A., Rohde,M., Overmann,J. ( 2015 ) Parviterribacter kavangonensis and Parviterribacter multiflagellatus a novel genus and two novel species within the order Solirubrobacterales and emended description of the classes Thermoleophilia and Rubrobacteria and its orders and families Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/26582010
2015 Finger,C., Gamer,M., Klunkelfuss,S., Bunk,B., Biedendieck,R. ( 2015 ) Impact of rare codons and the functional coproduction of rate-limiting tRNAs on recombinant protein production in Bacillus megaterium Appl Microbiol Biotechnol 99 (21) :8999-9010.

http://www.ncbi.nlm.nih.gov/pubmed/26138251
2015 Eder,W., Peplies,J., Wanner,G., Fruhling,A., Verbarg,S. ( 2015 ) Hydrobacter penzbergensis gen. nov., sp. nov., isolated from purified water Int J Syst Evol Microbiol 65 (Pt 3) :920-926.

http://www.ncbi.nlm.nih.gov/pubmed/25563914
2015 Dubinina,G., Grabovich,M., Leshcheva,N., Gronow,S., Gavrish,E., Akimov,V. ( 2015 ) Spirochaeta sinaica sp. nov., a halophilic spirochaete isolated from a cyanobacterial mat Int J Syst Evol Microbiol 65 (11) :3872-3877.

http://www.ncbi.nlm.nih.gov/pubmed/26243077
2015 Doijad,S., Imirzalioglu,C., Yao,Y., Pati,N.B., Falgenhauer,L., Hain,T., Foesel,B.U., Abt,B., Overmann,J., Mirambo,M.M., Mshana,S.E., Chakraborty,T. ( 2015 ) Enterobacter bugandensis sp. nov., from a neonatal unit in Tanzania Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/26637818
2015 Derelle,R., Torruella,G., Klimes,V., Brinkmann,H., Kim,E., Vlcek,C., Lang,B.F., Elias,M. ( 2015 ) Bacterial proteins pinpoint a single eukaryotic root Proc Natl Acad Sci U S A 112 (7) :E693-E699.

http://www.ncbi.nlm.nih.gov/pubmed/25646484
2015 Knierim,D., Maiss,E., Kenyon,L., Winter,S., Menzel,W. ( 2015 ) First full-length genome sequence of the polerovirus luffa aphid-borne yellows virus (LABYV) reveals the presence of at least two consensus sequences in an isolate from Thailand Arch Virol 160 :2633-2636.

2015 Debarbieux,L., Rohde,C., Pirnay,J.P., De,V.D., Verbeken,G. ( 2015 ) A bacteriophage journey at the European Medicines Agency FEMS Microbiol Lett

http://www.ncbi.nlm.nih.gov/pubmed/26656541
2015 Kone,N., Coulibali,A., Koita,O., Kone,D., Bediako,E.A., Knierim,D., Menzel,W., Winter,S. ( 2015 ) First report of Pepo aphid-borne yellows virus on zucchini in Cote d'Ivoire New Disease Reports 31 :27.

2015 Csotonyi,J.T., Maltman,C., Swiderski,J., Stackebrandt,E., Yurkov,V. ( 2015 ) Extremely 'vanadiphilic' multiply metal-resistant and halophilic aerobic anoxygenic phototrophs, strains EG13 and EG8, from hypersaline springs in Canada Extremophiles 19 (1) :127-134.

http://www.ncbi.nlm.nih.gov/pubmed/25209747
2015 Filloux,D., Murrell,S., Koohapitagtam,M., Golden,M., Julian,C., S.,G., Uzest,M., Rodier-Goud,M., D'Hont,A., Vernerey,M.S., Wilkin,P., Peterschmitt,M., Winter,S., Murrell,B., Martin,D.P., Roumagnac,P. ( 2015 ) The genomes of many yam species contain transcriptionally active endogenous geminiviral sequences that may be functionally expressed Virus Evolution 1 (1) :1-17.

2015 Courties,A., Riedel,T., Rapaport,A., Lebaron,P., Suzuki,M.T. ( 2015 ) Light-driven increase in carbon yield is linked to maintenance in the proteorhodopsin-containing Photobacterium angustum S14 Front Microbiol 6 :688.

http://www.ncbi.nlm.nih.gov/pubmed/26217320
2015 Bananej,K., Menzel,W., Glasa,M. ( 2015 ) Current status of Cucurbit aphid-borne yellows virus in greenhouse and open field cucumber in Iran Applied Entomology and Phytopathology 82 (2) :13-20.

2015 Cota,I., Bunk,B., Sproer,C., Overmann,J., Konig,C., Casadesus,J. ( 2015 ) OxyR-dependent formation of DNA methylation patterns in OpvABOFF and OpvABON cell lineages of Salmonella enterica Nucleic Acids Res

http://www.ncbi.nlm.nih.gov/pubmed/26687718
2015 Menzel,W., Hamacher,J., Winter,S. ( 2015 ) Characterization of a New Carlavirus from Gaillardia aristata Acta Horticulturae 1072 :129-133.

2015 Claussen,M., Lingner,T., Pommerenke,C., Opitz,L., Salinas,G., Pieler,T. ( 2015 ) Global analysis of asymmetric RNA enrichment in oocytes reveals low conservation between closely related Xenopus species Mol Biol Cell 26 (21) :3777-3787.

http://www.ncbi.nlm.nih.gov/pubmed/26337391
2015 Knierim,D., Maiss,E., Menzel,W., Winter,S., Kenyon,L. ( 2015 ) Characterization of the complete genome of a novel polerovirus infecting Sauropus androgynus in Thailand Journal of Phytopathology 163 :695-702.

2015 Choi,D.H., Ahn,C., Jang,G.I., Lapidus,A., Han,J., Reddy,T.B., Huntemann,M., Pati,A., Ivanova,N., Markowitz,V., Rohde,M., Tindall,B., Goker,M., Woyke,T., Klenk,H.P., Kyrpides,N.C., Cho,B.C. ( 2015 ) High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture Stand Genomic Sci 10 :98.

http://www.ncbi.nlm.nih.gov/pubmed/26566423
2015 Menzel,W., Bananej,K., Winter,S. ( 2015 ) Molecular characterization of a Cucumber Bulgarian latent virus isolate from Iran. Journal of Phytopathology 163 :1041-1045.

2015 Burghartz,M., Bunk,B., Sproer,C., Voget,S., Daniel,R., Overmann,J., Jahn,M. ( 2015 ) Complete Genome Sequence of the Urethral Catheter Isolate Myroides sp. A21 Genome Announc. 3 (2)

http://www.ncbi.nlm.nih.gov/pubmed/25745004
2015 Bouras,N., Meklat,A., Zitouni,A., Mathieu,F., Schumann,P., Sproer,C., Sabaou,N., Klenk,H.P. ( 2015 ) Nocardiopsis algeriensis sp. nov., an alkalitolerant actinomycete isolated from Saharan soil Antonie Van Leeuwenhoek 107 (2) :313-320.

http://www.ncbi.nlm.nih.gov/pubmed/25380720
2015 Boudjelal,F., Zitouni,A., Bouras,N., Schumann,P., Sproer,C., Sabaou,N., Klenk,H.P. ( 2015 ) Actinoalloteichus hoggarensis sp. nov., an actinomycete isolated from Saharan soil Int J Syst Evol Microbiol 65 (Pt 6) :2006-2010.

http://www.ncbi.nlm.nih.gov/pubmed/25825244
2015 Boubetra,D., Zitouni,A., Bouras,N., Schumann,P., Sproer,C., Klenk,H.P., Sabaou,N. ( 2015 ) Saccharothrix tamanrassetensis sp. nov., an actinomycete isolated from Saharan soil Int J Syst Evol Microbiol 65 (Pt 4) :1316-1320.

http://www.ncbi.nlm.nih.gov/pubmed/25667388
2015 Boubetra,D., Bouras,N., Zitouni,A., Schumann,P., Sproer,C., Sabaou,N., Klenk,H.P. ( 2015 ) Streptosporangium algeriense sp. nov., an actinobacterium isolated from desert soil Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/26647039
2015 Billerbeck,S., Orchard,J., Tindall,B.J., Giebel,H.A., Brinkhoff,T., Simon,M. ( 2015 ) Description of Octadecabacter temperatus sp. nov., isolated from the southern North Sea, emended descriptions of the genus Octadecabacter and its species and reclassification of Octadecabacter jejudonensisPark and Yoon 2014 as Pseudooctadecabacter jejudonensis gen. nov., comb. nov Int J Syst Evol Microbiol 65 (6) :1967-1974.

http://www.ncbi.nlm.nih.gov/pubmed/25816810
2015 BenHania,W., Joseph,M., Schumann,P., Bunk,B., Fiebig,A., Sproer,C., Klenk,H.P., Fardeau,M.L., Spring,S. ( 2015 ) Complete genome sequence and description of Salinispira pacifica gen. nov., sp. nov., a novel spirochaete isolated form a hypersaline microbial mat Standards in genomic sciences 10 (1) :7.

http://www.standardsingenomics.com/content/10/1/7
2015 Beims,H., Wittmann,J., Bunk,B., Sproer,C., Rohde,C., Gunther,G., Rohde,M., vonder,O.W., Steinert,M. ( 2015 ) Paenibacillus larvae-Directed Bacteriophage HB10c2 and Its Application in American Foulbrood-Affected Honey Bee Larvae Appl Environ Microbiol 81 (16) :5411-5419.

http://www.ncbi.nlm.nih.gov/pubmed/26048941
2015 Beims,H., Wittmann,J., Bunk,B., Sproer,C., Rohde,C., Gunther,G., Rohde,M., vonder,O.W., Steinert,M. ( 2015 ) Characterization of Paenibacillus larvae-directed bacteriophage HB10c2 and evaluation of its application in honey bee larvae suffering from American Foulbrood Appl Environ Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/26048941
2015 Behrendt,U., Augustin,J., Sproer,C., Gelbrecht,J., Schumann,P., Ulrich,A. ( 2015 ) Taxonomic characterisation of Proteus terrae sp. nov., a N2O-producing, nitrate-ammonifying soil bacterium Antonie Van Leeuwenhoek 108 (6) :1457-1468.

http://www.ncbi.nlm.nih.gov/pubmed/26437638
2015 Aouiche,A., Bouras,N., Mokrane,S., Zitouni,A., Schumann,P., Sproer,C., Sabaou,N., Klenk,H.P. ( 2015 ) Actinokineospora mzabensis sp. nov., a novel actinomycete isolated from Saharan soil Antonie Van Leeuwenhoek 107 (1) :291-296.

http://www.ncbi.nlm.nih.gov/pubmed/25378048
2015 Amoozegar,M.A., Makhdoumi-Kakhki,A., Mehrshad,M., Rasooli,M., Fazeli,S.A., Sproer,C., Ventosa,A. ( 2015 ) Halovivax cerinus sp. nov., an extremely halophilic archaeon from a hypersaline lake Int J Syst Evol Microbiol 65 (Pt 1) :65-70.

http://www.ncbi.nlm.nih.gov/pubmed/25269847
2015 Akhwale,J.K., Goker,M., Rohde,M., Sproer,C., Schumann,P., Klenk,H.P., Boga,H.I. ( 2015 ) Streptomyces alkaliphilus sp. nov., isolated from sediments of Lake Elmenteita in the Kenyan Rift Valley Antonie Van Leeuwenhoek 107 (5) :1249-1259.

http://www.ncbi.nlm.nih.gov/pubmed/25761860
2015 Akhwale,J.K., Goker,M., Rohde,M., Schumann,P., Klenk,H.P., Boga,H.I. ( 2015 ) Belliella kenyensis sp. nov., isolated from an alkaline lake Int J Syst Evol Microbiol 65 (Pt 2) :457-462.

http://www.ncbi.nlm.nih.gov/pubmed/25385994