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Publications of the DSMZ

Here you will find a complete list of all scientific publications.

Publications
2018 Becker,L., Fuchs,S., Pfeifer,Y., Semmler,T., Eckmanns,T., Korr,G., Sissolak,D., Friedrichs,M., Zill,E., Tung,M.L., Dohle,C., Kaase,M., Gatermann,S., Russmann,H., Steglich,M., Haller,S., Werner,G. ( 2018 ) Whole Genome Sequence Analysis of CTX-M-15 Producing Klebsiella Isolates Allowed Dissecting a Polyclonal Outbreak Scenario Front Microbiol 9 :322.

https://www.ncbi.nlm.nih.gov/pubmed/29527200
2018 Pitt,A., Schmidt,J., Lang,E., Whitman,W.B., Woyke,T., Hahn,M.W. ( 2018 ) Polynucleobacter meluiroseus sp. nov., a bacterium isolated from a lake located in the mountains of the Mediterranean island of Corsica Int J Syst Evol Microbiol 68 (6) :1975-1985.

https://www.ncbi.nlm.nih.gov/pubmed/29688164
2018 Mohammadipanah,F., Atasayar,E., Heidarian,S., Wink,J. ( 2018 ) Glycomyces sediminimaris sp. nov., a new species of actinobacteria isolated from marine sediment Int J Syst Evol Microbiol 68 (7) :2357-2363.

https://www.ncbi.nlm.nih.gov/pubmed/29869980
2018 Huber,K.J., Overmann,J. ( 2018 ) Vicinamibacteraceae fam. nov., the first described family within the subdivision 6 Acidobacteria Int J Syst Evol Microbiol 68 (7) :2331-2334.

https://www.ncbi.nlm.nih.gov/pubmed/29809123
2018 Hahn,M.W., Koll,U., Schmidt,J., Huymann,L.R., Karbon,G., Lang,E. ( 2018 ) Polynucleobacter hirudinilacicola sp. nov. and Polynucleobacter campilacus sp. nov., both isolated from freshwater systems Int J Syst Evol Microbiol

https://www.ncbi.nlm.nih.gov/pubmed/29939120
2018 Rohde,C., Resch,G., Pirnay,J.P., Blasdel,B.G., Debarbieux,L., Gelman,D., Gorski,A., Hazan,R., Huys,I., Kakabadze,E., Lobocka,M., Maestri,A., Almeida,G.M.F., Makalatia,K., Malik,D.J., Maslanova,I., Merabishvili,M., Pantucek,R., Rose,T., Stverakova,D., VanRaemdonck,H., Verbeken,G., Chanishvili,N. ( 2018 ) Expert Opinion on Three Phage Therapy Related Topics: Bacterial Phage Resistance, Phage Training and Prophages in Bacterial Production Strains Viruses 10 (4)

https://www.ncbi.nlm.nih.gov/pubmed/29621199
2018 Zecchin,S., Mueller,R.C., Seifert,J., Stingl,U., Anantharaman,K., vonBergen,M., Cavalca,L., Pester,M. ( 2018 ) Rice Paddy Nitrospirae Carry and Express Genes Related to Sulfate Respiration: Proposal of the New Genus "Candidatus Sulfobium" Applied and Environmental Microbiology 84 (5)

://WOS:000425012100012
2018 Yurkov,A.M. ( 2018 ) Yeasts of the soil - obscure but precious Yeast 35 (5) :369-378.

https://www.ncbi.nlm.nih.gov/pubmed/29365211
2018 Thomson,S.A., Pyle,R.L., Ahyong,S.T., Alonso-Zarazaga,M., Ammirati,J., Araya,J.F., Ascher,J.S., Audisio,T.L., Azevedo-Santos,V.M., Bailly,N., Baker,W.J., Balke,M., Barclay,M.V.L., Barrett,R.L., Benine,R.C., Bickerstaff,J.R.M., Bouchard,P., Bour,R., Bourgoin,T., Boyko,C.B., Breure,A.S.H., Brothers,D.J., Byng,J.W., Campbell,D., Ceriaco,L.M.P., Cernak,I., Cerretti,P., Chang,C.H., Cho,S., Copus,J.M., Costello,M.J., Cseh,A., Csuzdi,C., Culham,A., D'Elia,G., d'Udekemd'Acoz,C., Daneliya,M.E., Dekker,R., Dickinson,E.C., Dickinson,T.A., vanDijk,P.P., Dijkstra,K.B., Dima,B., Dmitriev,D.A., Duistermaat,L., Dumbacher,J.P., Eiserhardt,W.L., Ekrem,T., Evenhuis,N.L., Faille,A., Fernandez-Triana,J.L., Fiesler,E., Fishbein,M., Fordham,B.G., Freitas,A.V.L., Friol,N.R., Fritz,U., Froslev,T., Funk,V.A., Gaimari,S.D., Garbino,G.S.T., Garraffoni,A.R.S., Geml,J., Gill,A.C., Gray,A., Grazziotin,F.G., Greenslade,P., Gutierrez,E.E., Harvey,M.S., Hazevoet,C.J., He,K., He,X., Helfer,S., Helgen,K.M., vanHeteren,A.H., HitaGarcia,F., Holstein,N., Horvath,M.K., Hovenkamp,P.H., Hwang,W.S., Hyvonen,J., Islam,M.B., Iverson,J.B., Ivie,M.A., Jaafar,Z., Jackson,M.D., Jayat,J.P., Johnson,N.F., Kaiser,H., Klitgard,B.B., Knapp,D.G., Kojima,J.I., Koljalg,U., Kontschan,J., Krell,F.T., Krisai-Greilhuber,I., Kullander,S., Latella,L., Lattke,J.E., Lencioni,V., Lewis,G.P., Lhano,M.G., Lujan,N.K., Luksenburg,J.A., Mariaux,J., Marinho-Filho,J., Marshall,C.J., Mate,J.F., McDonough,M.M., Michel,E., Miranda,V.F.O., Mitroiu,M.D., Molinari,J., Monks,S., Moore,A.J., Moratelli,R., Muranyi,D., Nakano,T., Nikolaeva,S., Noyes,J., Ohl,M., Oleas,N.H., Orrell,T., Pall-Gergely,B., Pape,T., Papp,V., Parenti,L.R., Patterson,D., Pavlinov,I.Y., Pine,R.H., Poczai,P., Prado,J., Prathapan,D., Rabeler,R.K., Randall,J.E., Rheindt,F.E., Rhodin,A.G.J., Rodriguez,S.M., Rogers,D.C., Roque,F.O., Rowe,K.C., Ruedas,L.A., Salazar-Bravo,J., Salvador,R.B., Sangster,G., Sarmiento,C.E., Schigel,D.S., Schmidt,S., Schueler,F.W., Segers,H., Snow,N., Souza-Dias,P.G.B., Stals,R., Stenroos,S., Stone,R.D., Sturm,C.F., Stys,P., Teta,P., Thomas,D.C., Timm,R.M., Tindall,B.J., Todd,J.A., Triebel,D., Valdecasas,A.G., Vizzini,A., Vorontsova,M.S., deVos,J.M., Wagner,P., Watling,L., Weakley,A., Welter-Schultes,F., Whitmore,D., Wilding,N., Will,K., Williams,J., Wilson,K., Winston,J.E., Wuster,W., Yanega,D., Yeates,D.K., Zaher,H., Zhang,G., Zhang,Z.Q., Zhou,H.Z. ( 2018 ) Taxonomy based on science is necessary for global conservation PLoS Biol 16 (3) :e2005075.

https://www.ncbi.nlm.nih.gov/pubmed/29538381
2018 Spirin,V., Malysheva,V., Yurkov,A., Miettinen,O., Larsson,K.H. ( 2018 ) Studies in the Phaeotremella foliacea group (Tremellomycetes, Basidiomycota) Mycological Progress 17 (4) :451-466.

://WOS:000427507300004
2018 Schmidt,I.H.E., Gildhorn,C., Boning,M.A.L., Kulow,V.A., Steinmetz,I., Bast,A. ( 2018 ) Burkholderia pseudomallei modulates host iron homeostasis to facilitate iron availability and intracellular survival PLoS Negl Trop Dis 12 (1) :e0006096.

https://www.ncbi.nlm.nih.gov/pubmed/29329289
2018 Sybesma,W., Rohde,C., Bardy,P., Pirnay,J.P., Cooper,I., Caplin,J., Chanishvili,N., Coffey,A., DeVos,D., Scholz,A.H., McCallin,S., Puschner,H.M., Pantucek,R., Aminov,R., Doskar,J., Kurtbke,D.I. ( 2018 ) Silk Route to the Acceptance and Re-Implementation of Bacteriophage Therapy-Part II Antibiotics (Basel) 7 (2)

https://www.ncbi.nlm.nih.gov/pubmed/29690620
2018 Spring,S., Bunk,B., Sproer,C., Rohde,M., Klenk,H.P. ( 2018 ) Genome biology of a novel lineage of planctomycetes widespread in anoxic aquatic environments Environ Microbiol

https://www.ncbi.nlm.nih.gov/pubmed/29697183
2018 Shibl,A.A., Ngugi,D.K., Talarmin,A., Thompson,L.R., Blom,J., Stingl,U. ( 2018 ) The genome of a novel isolate of Prochlorococcus from the Red Sea contains transcribed genes for compatible solute biosynthesis FEMS Microbiol Ecol 94 (12)

https://www.ncbi.nlm.nih.gov/pubmed/30188995
2018 Adriaenssens,E.M., Wittmann,J., Kuhn,J.H., Turner,D., Sullivan,M.B., Dutilh,B.E., Jang,H.B., vanZyl,L.J., Klumpp,J., Lobocka,M., MorenoSwitt,A.I., Rumnieks,J., Edwards,R.A., Uchiyama,J., Alfenas-Zerbini,P., Petty,N.K., Kropinski,A.M., Barylski,J., Gillis,A., Clokie,M.R.C., Prangishvili,D., Lavigne,R., Aziz,R.K., Duffy,S., Krupovic,M., Poranen,M.M., Knezevic,P., Enault,F., Tong,Y., Oksanen,H.M., RodneyBrister,J. ( 2018 ) Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee Arch Virol 163 (4) :1125-1129.

https://www.ncbi.nlm.nih.gov/pubmed/29356990
2018 Anantharaman,K., Hausmann,B., Jungbluth,S.P., Kantor,R.S., Lavy,A., Warren,L.A., Rappe,M.S., Pester,M., Loy,A., Thomas,B.C., Banfield,J.F. ( 2018 ) Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle ISME J

https://www.ncbi.nlm.nih.gov/pubmed/29467397
2018 Hausmann,B., Pelikan,C., Herbold,C.W., Kostlbacher,S., Albertsen,M., Eichorst,S.A., GlavinaDelRio,T., Huemer,M., Nielsen,P.H., Rattei,T., Stingl,U., Tringe,S.G., Trojan,D., Wentrup,C., Woebken,D., Pester,M., Loy,A. ( 2018 ) Peatland Acidobacteria with a dissimilatory sulfur metabolism ISME J

https://www.ncbi.nlm.nih.gov/pubmed/29476143
2018 Webster,C.G., Pichon,E., vanMunster,M., Monsion,B., Deshoux,M., Gargani,D., Calevro,F., Jimenez,J., Moreno,A., Krenz,B., Thompson,J.R., Perry,K.L., Fereres,A., Blanc,S., Uzest,M. ( 2018 ) Identification of plant virus receptor candidates in the stylets of their aphid vectors J Virol

https://www.ncbi.nlm.nih.gov/pubmed/29769332
2018 Webster,C.G., Pichon,E., vanMunster,M., Monsion,B., Deshoux,M., Gargani,D., Calevro,F., Jimenez,J., Moreno,A., Krenz,B., Thompson,J.R., Perry,K.L., Fereres,A., Blanc,S., Uzest,M. ( 2018 ) Identification of plant virus receptor candidates in the stylets of their aphid vectors J Virol

https://www.ncbi.nlm.nih.gov/pubmed/29769332
2018 Yepes,L.M., Cieniewicz,E.J., Krenz,B., McLane,H., Thompson,J.R., Perry,K.L., Fuchs,M. ( 2018 ) Causative Role of Grapevine Red Blotch Virus in Red Blotch Disease Phytopathology

2018 Berges,M., Michel,A.M., Lassek,C., Nuss,A.M., Beckstette,M., Dersch,P., Riedel,K., Sievers,S., Becher,D., Otto,A., Maass,S., Rohde,M., Eckweiler,D., Borrero-deAcuna,J.M., Jahn,M., Neumann-Schaal,M., Jahn,D. ( 2018 ) Iron Regulation in Clostridioides difficile Front Microbiol 9 :3183.

https://www.ncbi.nlm.nih.gov/pubmed/30619231
2018 Bernal,I., Hofmann,J.D., Bulitta,B., Klawonn,F., Michel,A.M., Jahn,D., Neumann-Schaal,M., Bruder,D., Jansch,L. ( 2018 ) Clostridioides difficile Activates Human Mucosal-Associated Invariant T Cells Front Microbiol 9 :2532.

https://www.ncbi.nlm.nih.gov/pubmed/30410474
2018 Bischof,L.F., Haurat,M.F., Hoffmann,L., Albersmeier,A., Wolf,J., Neu,A., Pham,T.K., Albaum,S.P., Jakobi,T., Schouten,S., Neumann-Schaal,M., Wright,P.C., Kalinowski,J., Siebers,B., Albers,S.V. ( 2018 ) Early Response of Sulfolobus acidocaldarius to Nutrient Limitation Front Microbiol 9 :3201.

https://www.ncbi.nlm.nih.gov/pubmed/30687244
2018 Hofmann,J.D., Otto,A., Berges,M., Biedendieck,R., Michel,A.M., Becher,D., Jahn,D., Neumann-Schaal,M. ( 2018 ) Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production Front Microbiol 9 :1970.

https://www.ncbi.nlm.nih.gov/pubmed/30186274
2018 Neumann-Schaal,M., Metzendorf,N.G., Troitzsch,D., Nuss,A.M., Hofmann,J.D., Beckstette,M., Dersch,P., Otto,A., Sievers,S. ( 2018 ) Tracking gene expression and oxidative damage of O2-stressed Clostridioides difficile by a multi-omics approach Anaerobe

https://www.ncbi.nlm.nih.gov/pubmed/29859941
2018 Hofmann,J.D., Otto,A., Berges,M., Biedendieck,R., Michel,A.M., Becher,D., Jahn,D., Neumann-Schaal,M. ( 2018 ) Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production Front Microbiol 9 :1970.

https://www.ncbi.nlm.nih.gov/pubmed/30186274
2018 Ghequire,M.G.K., Ozturk,B., DeMot,R. ( 2018 ) Lectin-Like Bacteriocins Front Microbiol 9 :2706.

https://www.ncbi.nlm.nih.gov/pubmed/30483232
2018 Ghequire,M.G.K., Ozturk,B. ( 2018 ) A colicin M-type bacteriocin from Pseudomonas aeruginosa targeting the HxuC heme receptor requires a novel immunity partner Appl Environ Microbiol

https://www.ncbi.nlm.nih.gov/pubmed/29980560
2018 Pascual,J., Huber,K.J., Overmann,J. ( 2018 ) Brevitalea Bergey's Manual of Systematic Bacteriology

2018 Pascual,J., Huber,K.J., Overmann,J. ( 2018 ) Pyrinomonadaceae Bergey's Manual of Systematic Bacteriology

2018 Pascual,J., Huber,K.J., Overmann,J. ( 2018 ) Arenimicrobium Bergey's Manual of Systematic Bacteriology

2018 Kubannek,F., Moß,C., Huber,K., Overmann,J., Schröder,U., Krewer,U. ( 2018 ) Concentration Pulse Method for the Investigation of Transformation Pathways in a Glycerol-Fed Bioelectrochemical System Front Energy Res 6

2018 Wiegand,S., Jogler,M., Jogler,C. ( 2018 ) On the maverick Planctomycetes FEMS Microbiol Rev 42 (6) :739-760.

https://www.ncbi.nlm.nih.gov/pubmed/30052954
2018 Mehner-Breitfeld,D., Rathmann,C., Riedel,T., Just,I., Gerhard,R., Overmann,J., Bruser,T. ( 2018 ) Evidence for an Adaptation of a Phage-Derived Holin/Endolysin System to Toxin Transport in Clostridioides difficile Front Microbiol 9 :2446.

https://www.ncbi.nlm.nih.gov/pubmed/30405545
2018 RioBartulos,C., Rogers,M.B., Williams,T.A., Gentekaki,E., Brinkmann,H., Cerff,R., Liaud,M.F., Hehl,A.B., Yarlett,N.R., Gruber,A., Kroth,P.G., vanderGiezen,M. ( 2018 ) Mitochondrial Glycolysis in a Major Lineage of Eukaryotes Genome Biol Evol 10 (9) :2310-2325.

https://www.ncbi.nlm.nih.gov/pubmed/30060189
2018 Bartling,P., Vollmers,J., Petersen,J. ( 2018 ) The first world swimming championships of roseobacters-Phylogenomic insights into an exceptional motility phenotype Syst Appl Microbiol 41 (6) :544-554.

https://www.ncbi.nlm.nih.gov/pubmed/30224097
2018 Doijad,S.P., Poharkar,K.V., Kale,S.B., Kerkar,S., Kalorey,D.R., Kurkure,N.V., Rawool,D.B., Malik,S.V.S., Ahmad,R.Y., Hudel,M., Chaudhari,S.P., Abt,B., Overmann,J., Weigel,M., Hain,T., Barbuddhe,S.B., Chakraborty,T. ( 2018 ) Listeria goaensis sp. nov Int J Syst Evol Microbiol 68 (10) :3285-3291.

https://www.ncbi.nlm.nih.gov/pubmed/30156532
2018 Bajerski,F., Stock,J., Hanf,B., Darienko,T., Heine-Dobbernack,E., Lorenz,M., Naujox,L., Keller,E.R.J., Schumacher,H.M., Friedl,T., Eberth,S., Mock,H.P., Kniemeyer,O., Overmann,J. ( 2018 ) ATP Content and Cell Viability as Indicators for Cryostress Across the Diversity of Life Front Physiol 9 :921.

https://www.ncbi.nlm.nih.gov/pubmed/30065659
2018 Seugendo,M., Janssen,I., Lang,V., Hasibuan,I., Bohne,W., Cooper,P., Daniel,R., Gunka,K., Kusumawati,R.L., Mshana,S.E., vonMuller,L., Okamo,B., Ortlepp,J.R., Overmann,J., Riedel,T., Rupnik,M., Zimmermann,O., Gross,U. ( 2018 ) Prevalence and Strain Characterization of Clostridioides (Clostridium) difficile in Representative Regions of Germany, Ghana, Tanzania and Indonesia - A Comparative Multi-Center Cross-Sectional Study Front Microbiol 9 :1843.

https://www.ncbi.nlm.nih.gov/pubmed/30131799
2018 Ramirez-Vargas,G., Lopez-Urena,D., Badilla,A., Orozco-Aguilar,J., Murillo,T., Rojas,P., Riedel,T., Overmann,J., Gonzalez,G., Chaves-Olarte,E., Quesada-Gomez,C., Rodriguez,C. ( 2018 ) Novel Clade C-I Clostridium difficile strains escape diagnostic tests, differ in pathogenicity potential and carry toxins on extrachromosomal elements Sci Rep 8 (1) :13951.

https://www.ncbi.nlm.nih.gov/pubmed/30224751
2018 Lubke,A.L., Minatelli,S., Riedel,T., Lugert,R., Schober,I., Sproer,C., Overmann,J., Gross,U., Zautner,A.E., Bohne,W. ( 2018 ) The transducer-like protein Tlp12 of Campylobacter jejuni is involved in glutamate and pyruvate chemotaxis BMC Microbiol 18 (1) :111.

https://www.ncbi.nlm.nih.gov/pubmed/30200886
2018 Bajerski,F., Stock,J., Hanf,B., Darienko,T., Heine-Dobbernack,E., Lorenz,M., Naujox,L., Keller,E.R.J., Schumacher,H.M., Friedl,T., Eberth,S., Mock,H.P., Kniemeyer,O., Overmann,J. ( 2018 ) ATP Content and Cell Viability as Indicators for Cryostress Across the Diversity of Life Front Physiol 9 :921.

https://www.ncbi.nlm.nih.gov/pubmed/30065659
2018 Steglich,M., Hofmann,J.D., Helmecke,J., Sikorski,J., Sproer,C., Riedel,T., Bunk,B., Overmann,J., Neumann-Schaal,M., Nübel,U. ( 2018 ) Convergent Loss of ABC Transporter Genes From Clostridioides difficile Genomes Is Associated With Impaired Tyrosine Uptake and p-Cresol Production Front Microbiol 9 :901.

https://www.ncbi.nlm.nih.gov/pubmed/29867812
2018 Ludewig-Klingner,A.K., Michael,V., Jarek,M., Brinkmann,H., Petersen,J. ( 2018 ) Distribution and Evolution of Peroxisomes in Alveolates (Apicomplexa, Dinoflagellates, Ciliates) Genome Biol Evol 10 (1) :1-13.

https://www.ncbi.nlm.nih.gov/pubmed/29202176
2018 Gutleben,J., ChaibDeMares,M., vanElsas,J.D., Smidt,H., Overmann,J., Sipkema,D. ( 2018 ) The multi-omics promise in context: from sequence to microbial isolate Crit Rev Microbiol 44 (2) :212-229.

https://www.ncbi.nlm.nih.gov/pubmed/28562180
2018 Schall,P., Gossner,M.M., Heinrichs,S., Fischer,M., Boch,S., Prati,D., Jung,K., Baumgartner,V., Blaser,S., Bohm,S., Buscot,F., Daniel,R., Goldmann,K., Kaiser,K., Kahl,T., Lange,M., Muller,J., Overmann,J., Renner,S.C., Schulze,E.D., Sikorski,J., Tschapka,M., Turke,M., Weisser,W.W., Wemheuer,B., Wubet,T., Ammer,C. ( 2018 ) The impact of even-aged and uneven-aged forest management on regional biodiversity of multiple taxa in European beech forests Journal of Applied Ecology 55 (1) :267-278.

://WOS:000417764600027
2018 Klotz,F., Brinkhoff,T., Freese,H.M., Wietz,M., Teske,A., Simon,M., Giebel,H.A. ( 2018 ) Tritonibacter horizontis gen. nov., sp. nov., a member of the Rhodobacteraceae, isolated from the Deepwater Horizon oil spill Int J Syst Evol Microbiol 68 (3) :736-744.

https://www.ncbi.nlm.nih.gov/pubmed/29458459
2018 Tomasch,J., Wang,H., Hall,A.T.K., Patzelt,D., Preusse,M., Petersen,J., Brinkmann,H., Bunk,B., Bhuju,S., Jarek,M., Geffers,R., Lang,A.S., Wagner-Dobler,I. ( 2018 ) Packaging of Dinoroseobacter shibae DNA into Gene Transfer Agent Particles Is Not Random Genome Biol Evol 10 (1) :359-369.

https://www.ncbi.nlm.nih.gov/pubmed/29325123
2018 Pati,N.B., Doijad,S.P., Schultze,T., Mannala,G.K., Yao,Y., Jaiswal,S., Ryan,D., Suar,M., Gwozdzinski,K., Bunk,B., Mraheil,M.A., Marahiel,M.A., Hegemann,J.D., Sproer,C., Goesmann,A., Falgenhauer,L., Hain,T., Imirzalioglu,C., Mshana,S.E., Overmann,J., Chakraborty,T. ( 2018 ) Enterobacter bugandensis: a novel enterobacterial species associated with severe clinical infection Sci Rep 8 (1) :5392.

https://www.ncbi.nlm.nih.gov/pubmed/29599516
2018 Gutleben,J., ChaibDeMares,M., vanElsas,J.D., Smidt,H., Overmann,J., Sipkema,D. ( 2018 ) The multi-omics promise in context: from sequence to microbial isolate Crit Rev Microbiol 44 (2) :212-229.

https://www.ncbi.nlm.nih.gov/pubmed/28562180
2018 Becker,K.W., Elling,F.J., Schroder,J.M., Lipp,J.S., Goldhammer,T., Zabel,M., Elvert,M., Overmann,J., Hinrichs,K.U. ( 2018 ) Isoprenoid quinones resolve the stratification of microbial redox processes in a biogeochemical continuum from the photic zone to deep anoxic sediments of the Black Sea Appl Environ Microbiol

https://www.ncbi.nlm.nih.gov/pubmed/29523543
2018 Pascual,J., Foesel,B.U., Geppert,A., Huber,K.J., Boedeker,C., Luckner,M., Wanner,G., Overmann,J. ( 2018 ) Roseisolibacter agri gen. nov., sp. nov., a novel slow-growing member of the under-represented phylum Gemmatimonadetes Int J Syst Evol Microbiol 68 (4) :1028-1036.

https://www.ncbi.nlm.nih.gov/pubmed/29458671
2018 Murillo,T., Ramirez-Vargas,G., Riedel,T., Overmann,J., Andersen,J.M., Guzman-Verri,C., Chaves-Olarte,E., Rodriguez,C. ( 2018 ) Two Groups of Cocirculating, Epidemic Clostridiodes difficile Strains Microdiversify through Different Mechanisms Genome Biol Evol 10 (3) :982-998.

https://www.ncbi.nlm.nih.gov/pubmed/29617810
2018 Filloux,D., Fernandez,E., Loire,E., Claude,L., Galzi,S., Candresse,T., Winter,S., Jeeva,M.L., Makeshkumar,T., Martin,D.P., Roumagnac,P. ( 2018 ) Nanopore-based detection and characterization of yam viruses Sci Rep 8 (1) :17879.

https://www.ncbi.nlm.nih.gov/pubmed/30552347
2018 Menzel,W., Winter,S. ( 2018 ) B-Fast ELISA: application of a new ELISA technique for the rapid detection of Pepino mosaic virus. Acta Horticulturae 1207 :147-154.

2018 Munganyinka,E., Margaria,P., Sheat,S., Ateka,E.M., Tairo,F., Ndunguru,J., Winter,S. ( 2018 ) Localization of cassava brown streak virus in Nicotiana rustica and cassava Manihot esculenta (Crantz) using RNAscope in situ hybridization Virology Journal 15 (128)

2017 Rottig,A., Atasayar,E., Meier-Kolthoff,J.P., Sproer,C., Schumann,P., Schauer,J., Steinbuchel,A. ( 2017 ) Streptomyces jeddahensis sp nov., an oleaginous bacterium isolated from desert soil International Journal of Systematic and Evolutionary Microbiology 67 (6) :1676-1682.

://WOS:000405503800010
2017 Atasayar,E., Zimmermann,O., Sproer,C., Schumann,P., Gross,U. ( 2017 ) Corynebacterium gottingense sp nov., isolated from a clinical patient International Journal of Systematic and Evolutionary Microbiology 67 (11) :4494-4499.

://WOS:000414976000032
2017 Felfoldi,T., Schumann,P., Mentes,A., Keki,Z., Mathe,I., Toth,E.M. ( 2017 ) Caenimicrobium hargitense gen. nov., sp nov., a new member of the family Alcaligenaceae (Betaproteobacteria) isolated from activated sludge International Journal of Systematic and Evolutionary Microbiology 67 (3) :627-632.

://WOS:000399232900016
2017 Dösselmann,B., Willmann,M., Steglich,M., Bunk,B., Nübel,U., Peter,S., Neher,R.A. ( 2017 ) Rapid and Consistent Evolution of Colistin Resistance in Extensively Drug-Resistant Pseudomonas aeruginosa during Morbidostat Culture Antimicrob Agents Chemother 61 (9)

https://www.ncbi.nlm.nih.gov/pubmed/28630206
2017 Toth,E., Szuroczki,S., Keki,Z., Kosztik,J., Makk,J., Boka,K., Sproer,C., Marialigeti,K., Schumann,P. ( 2017 ) Brevundimonas balnearis sp nov., isolated from the well water of a thermal bath International Journal of Systematic and Evolutionary Microbiology 67 (4) :1033-1038.

://WOS:000401992800045
2017 Hezbri,K., Nouioui,I., Rohde,M., Schumann,P., Gtari,M., Klenk,H.P., Montero-Calasanz,M.D., Ghodhbane-Gtari,F. ( 2017 ) Blastococcus colisei sp. nov, isolated from an archaeological amphitheatre Antonie Van Leeuwenhoek 110 (3) :339-346.

https://www.ncbi.nlm.nih.gov/pubmed/27896686
2017 Dubinina,G., Savvichev,A., Orlova,M., Gavrish,E., Verbarg,S., Grabovich,M. ( 2017 ) Beggiatoa leptomitoformis sp nov., the first freshwater member of the genus capable of chemolithoautotrophic growth International Journal of Systematic and Evolutionary Microbiology 67 (2) :197-204.

://WOS:000397002800003
2017 Liu,B., Liu,G.H., Sengonca,C., Schumann,P., Wang,J.P., Zhu,Y.J., Zhang,H.F. ( 2017 ) Bacillus wudalianchiensis sp nov., isolated from grass soils of the Wudalianchi scenic area International Journal of Systematic and Evolutionary Microbiology 67 (8) :2897-2902.

://WOS:000409533100063
2017 Liu,B., Liu,G.H., Sengonca,C., Schumann,P., Wang,J.P., Zhu,Y.J., Liu,Q.Y., Wang,M.K. ( 2017 ) Bacillus praedii sp nov., isolated from purplish paddy soil International Journal of Systematic and Evolutionary Microbiology 67 (8) :2823-2828.

://WOS:000409533100051
2017 Borsodi,A.K., Toth,E., Aszalos,J.M., Barany,A., Schumann,P., Sproer,C., Kovacs,A.L., Marialigeti,K., Szili-Kovacs,T. ( 2017 ) Bacillus kiskunsagensis sp nov., a novel alkaliphilic and moderately halophilic bacterium isolated from soda soil International Journal of Systematic and Evolutionary Microbiology 67 (9) :3490-3495.

://WOS:000417836100059
2017 Liu,Y., Li,N.N., Eom,M.K., Schumann,P., Zhang,X., Cao,Y.H., Ge,Y.Y., Xiao,M., Zhao,J.R., Cheng,C., Kim,S.G. ( 2017 ) Bacillus ciccensis sp nov., isolated from maize (Zea mays L.) seeds International Journal of Systematic and Evolutionary Microbiology 67 (11) :4606-4611.

://WOS:000414976000050
2017 Shahinpei,A., Amoozegar,M.A., Fazeli,S.A.S., Schumann,P., Sproer,C., Ventosa,A. ( 2017 ) Aliidiomarina sedimenti sp nov., a haloalkaliphilic bacterium in the family Idiomarinaceae International Journal of Systematic and Evolutionary Microbiology 67 (7) :2087-2092.

://WOS:000408263300002
2017 Kim,J.J., Marjerrison,C.E., Shartau,S.L.C., Brady,A.L., Sharp,C.E., Rijpstra,W.I.C., Damste,J.S.S., Schumann,P., Grasby,S.E., Dunfield,P.F. ( 2017 ) Actinocrinis puniceicyclus gen. nov., sp nov., an actinobacterium isolated from an acidic spring International Journal of Systematic and Evolutionary Microbiology 67 (3) :602-609.

://WOS:000399232900012
2017 Wendling,C.C., Piecyk,A., Refardt,D., Chibani,C., Hertel,R., Liesegang,H., Bunk,B., Overmann,J., Roth,O. ( 2017 ) Tripartite species interaction: eukaryotic hosts suffer more from phage susceptible than from phage resistant bacteria BMC Evol Biol 17 (1) :98.

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2017 Sczyrba,A., Hofmann,P., Belmann,P., Koslicki,D., Janssen,S., Droge,J., Gregor,I., Majda,S., Fiedler,J., Dahms,E., Bremges,A., Fritz,A., Garrido-Oter,R., Jorgensen,T.S., Shapiro,N., Blood,P.D., Gurevich,A., Bai,Y., Turaev,D., DeMaere,M.Z., Chikhi,R., Nagarajan,N., Quince,C., Meyer,F., Balvociute,M., Hansen,L.H., Sorensen,S.J., Chia,B.K.H., Denis,B., Froula,J.L., Wang,Z., Egan,R., DonKang,D., Cook,J.J., Deltel,C., Beckstette,M., Lemaitre,C., Peterlongo,P., Rizk,G., Lavenier,D., Wu,Y.W., Singer,S.W., Jain,C., Strous,M., Klingenberg,H., Meinicke,P., Barton,M.D., Lingner,T., Lin,H.H., Liao,Y.C., Silva,G.G.Z., Cuevas,D.A., Edwards,R.A., Saha,S., Piro,V.C., Renard,B.Y., Pop,M., Klenk,H.P., Goker,M., Kyrpides,N.C., Woyke,T., Vorholt,J.A., Schulze-Lefert,P., Rubin,E.M., Darling,A.E., Rattei,T., McHardy,A.C. ( 2017 ) Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software Nat Methods 14 (11) :1063-1071.

https://www.ncbi.nlm.nih.gov/pubmed/28967888
2017 Mukherjee,S., Seshadri,R., Varghese,N.J., Eloe-Fadrosh,E.A., Meier-Kolthoff,J.P., Goker,M., Coates,R.C., Hadjithomas,M., Pavlopoulos,G.A., Paez-Espino,D., Yoshikuni,Y., Visel,A., Whitman,W.B., Garrity,G.M., Eisen,J.A., Hugenholtz,P., Pati,A., Ivanova,N.N., Woyke,T., Klenk,H.P., Kyrpides,N.C. ( 2017 ) 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life Nat Biotechnol 35 (7) :676-683.

https://www.ncbi.nlm.nih.gov/pubmed/28604660
2017 Meier-Kolthoff,J.P., Goker,M. ( 2017 ) VICTOR: genome-based phylogeny and classification of prokaryotic viruses Bioinformatics 33 (21) :3396-3404.

https://www.ncbi.nlm.nih.gov/pubmed/29036289
2017 deHoog,G.S., Dukik,K., Monod,M., Packeu,A., Stubbe,D., Hendrickx,M., Kupsch,C., Stielow,J.B., Freeke,J., Goker,M., Rezaei-Matehkolaei,A., Mirhendi,H., Graser,Y. ( 2017 ) Toward a Novel Multilocus Phylogenetic Taxonomy for the Dermatophytes Mycopathologia 182 (1-2) :5-31.

https://www.ncbi.nlm.nih.gov/pubmed/27783317
2017 Zautner,A.E., Bunk,B., Pfeifer,Y., Sproer,C., Reichard,U., Eiffert,H., Scheithauer,S., Gross,U., Overmann,J., Bohne,W. ( 2017 ) Monitoring microevolution of OXA-48-producing Klebsiella pneumoniae ST147 in a hospital setting by SMRT sequencing J Antimicrob Chemother 72 (10) :2737-2744.

https://www.ncbi.nlm.nih.gov/pubmed/29091199
2017 Riedel,T., Wetzel,D., Hofmann,J.D., Plorin,S., Dannheim,H., Berges,M., Zimmermann,O., Bunk,B., Schober,I., Sproer,C., Liesegang,H., Jahn,D., Overmann,J., Gross,U., Neumann-Schaal,M. ( 2017 ) High metabolic versatility of different toxigenic and non-toxigenic Clostridioides difficile isolates Int J Med Microbiol 307 (6) :311-320.

https://www.ncbi.nlm.nih.gov/pubmed/28619474
2017 Kublanov,I.V., Sigalova,O.M., Gavrilov,S.N., Lebedinsky,A.V., Rinke,C., Kovaleva,O., Chernyh,N.A., Ivanova,N., Daum,C., Reddy,T.B., Klenk,H.P., Spring,S., Goker,M., Reva,O.N., Miroshnichenko,M.L., Kyrpides,N.C., Woyke,T., Gelfand,M.S., Bonch-Osmolovskaya,E.A. ( 2017 ) Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota Front Microbiol 8 :195.

https://www.ncbi.nlm.nih.gov/pubmed/28265262
2017 Hollensteiner,J., Poehlein,A., Sproer,C., Bunk,B., Sheppard,A.E., Rosenstiel,P., Schulenburg,H., Liesegang,H. ( 2017 ) Complete genome sequence of the nematicidal Bacillus thuringiensis MYBT18247 J Biotechnol 260 :48-52.

https://www.ncbi.nlm.nih.gov/pubmed/28899808
2017 Garzetti,D., Brugiroux,S., Bunk,B., Pukall,R., McCoy,K.D., Macpherson,A.J., Stecher,B. ( 2017 ) High-Quality Whole-Genome Sequences of the Oligo-Mouse-Microbiota Bacterial Community Genome Announc 5 (42)

https://www.ncbi.nlm.nih.gov/pubmed/29051233
2017 Breider,S., Freese,H.M., Sproer,C., Simon,M., Overmann,J., Brinkhoff,T. ( 2017 ) Phaeobacter porticola sp nov., an antibiotic-producing bacterium isolated from a sea harbour International Journal of Systematic and Evolutionary Microbiology 67 (7) :2153-2159.

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2017 Jiao,J.Y., Carro,L., Liu,L., Gao,X.Y., Zhang,X.T., Hozzein,W.N., Lapidus,A., Huntemann,M., Reddy,T.B.K., Varghese,N., Hadjithomas,M., Ivanova,N.N., Goker,M., Pillay,M., Eisen,J.A., Woyke,T., Klenk,H.P., Kyrpides,N.C., Li,W.J. ( 2017 ) Complete genome sequence of Jiangella gansuensis strain YIM 002(T) (DSM 44835(T)), the type species of the genus Jiangella and source of new antibiotic compounds Stand Genomic Sci 12 :21.

https://www.ncbi.nlm.nih.gov/pubmed/28174619
2017 Laviad-Shitrit,S., Goker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K., Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T.B.K., Daum,C., Shapiro,N., Markowitz,V., Ivanova,N., Woyke,T., Klenk,H.P., Kyrpides,N.C., Halpern,M. ( 2017 ) High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482(T), isolated from raw cow milk Stand Genomic Sci 12 :31.

https://www.ncbi.nlm.nih.gov/pubmed/28491240
2017 Nouioui,I., Goker,M., Carro,L., Montero-Calasanz,M.D., Rohde,M., Woyke,T., Kyrpides,N.C., Klenk,H.P. ( 2017 ) High quality draft genome of Nakamurella lactea type strain, a rock actinobacterium, and emended description of Nakamurella lactea Stand Genomic Sci 12 :4.

https://www.ncbi.nlm.nih.gov/pubmed/28074122
2017 Ahn,A.C., Meier-Kolthoff,J.P., Overmars,L., Richter,M., Woyke,T., Sorokin,D.Y., Muyzer,G. ( 2017 ) Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio PLoS One 12 (3) :e0173517.

https://www.ncbi.nlm.nih.gov/pubmed/28282461
2017 Beyersmann,P.G., Tomasch,J., Son,K., Stocker,R., Goker,M., Wagner-Dobler,I., Simon,M., Brinkhoff,T. ( 2017 ) Dual function of tropodithietic acid as antibiotic and signaling molecule in global gene regulation of the probiotic bacterium Phaeobacter inhibens Sci Rep 7 (1) :730.

https://www.ncbi.nlm.nih.gov/pubmed/28389641
2017 Riedel,T., Wittmann,J., Bunk,B., Schober,I., Sproer,C., Gronow,S., Overmann,J. ( 2017 ) A Clostridioides difficile bacteriophage genome encodes functional binary toxin-associated genes J Biotechnol 250 :23-28.

https://www.ncbi.nlm.nih.gov/pubmed/28216103
2017 Schumann,P., Pukall,R. ( 2017 ) Leucobacter weissii sp nov., an isolate from activated sludge once described as first representative of the peptidoglycan variation B2 delta, and emended description of the genus Leucobacter International Journal of Systematic and Evolutionary Microbiology 67 (12) :5244-5251.

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2017 Panschin,I., Becher,M., Verbarg,S., Sproer,C., Rohde,M., Schuler,M., Amann,R.I., Harder,J., Tindall,B.J., Hahnke,R.L. ( 2017 ) Description of Gramella forsetii sp nov., a marine Flavobacteriaceae isolated from North Sea water, and emended description of Gramella gaetbulicola Cho et al. 2011 International Journal of Systematic and Evolutionary Microbiology 67 (3) :697-703.

://WOS:000399232900028
2017 Choi,D.H., Jang,G.I., Lapidus,A., Copeland,A., Reddy,T.B.K., Mukherjee,S., Huntemann,M., Varghese,N., Ivanova,N., Pillay,M., Tindall,B.J., Goker,M., Woyke,T., Klenk,H.P., Kyrpides,N.C., Cho,B.C. ( 2017 ) Draft genome sequence of Marinobacterium rhizophilum CL-YJ9(T) (DSM 18822(T)), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica Stand Genomic Sci 12 :65.

https://www.ncbi.nlm.nih.gov/pubmed/29093768
2017 ChaabaneChaouch,F., Bouras,N., Mokrane,S., Bouznada,K., Zitouni,A., Potter,G., Sproer,C., Klenk,H.P., Sabaou,N. ( 2017 ) Planomonospora algeriensis sp. nov., an actinobacterium isolated from a Saharan soil of Algeria Antonie Van Leeuwenhoek 110 (2) :245-252.

https://www.ncbi.nlm.nih.gov/pubmed/27803992
2017 Koskinen,K., Rettberg,P., Pukall,R., Auerbach,A., Wink,L., Barczyk,S., Perras,A., Mahnert,A., Margheritis,D., Kminek,G., Moissl-Eichinger,C. ( 2017 ) Microbial biodiversity assessment of the European Space Agency's ExoMars 2016 mission Microbiome 5 (1) :143.

https://www.ncbi.nlm.nih.gov/pubmed/29070062
2017 Matrosova,V.Y., Gaidamakova,E.K., Makarova,K.S., Grichenko,O., Klimenkova,P., Volpe,R.P., Tkavc,R., Ertem,G., Conze,I.H., Brambilla,E., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K., Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N., Woyke,T., Daligault,H., Davenport,K., Erkkila,T., Goodwin,L.A., Gu,W., Munk,C., Teshima,H., Xu,Y., Chain,P., Woolbert,M., Gunde-Cimerman,N., Wolf,Y.I., Grebenc,T., Gostincar,C., Daly,M.J. ( 2017 ) High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460 Stand Genomic Sci 12 :46.

https://www.ncbi.nlm.nih.gov/pubmed/28775794
2017 Nasr,S., Mohammadimehr,M., Vaghei,M.G., Amoozegar,M.A., Fazeli,S.A.S., Yurkov,A. ( 2017 ) Jaminaea pallidilutea sp nov (Microstromatales), a basidiomycetous yeast isolated from plant material of mangrove forests in Iran International Journal of Systematic and Evolutionary Microbiology 67 (11) :4405-4408.

://WOS:000414976000018
2017 Nouioui,I., Carro,L., Teramoto,K., Igual,J.M., Jando,M., Montero-Calasanz,M.D., Sutcliffe,I., Sangal,V., Goodfellow,M., Klenk,H.P. ( 2017 ) Mycobacterium eburneum sp nov., a non-chromogenic, fast-growing strain isolated from sputum International Journal of Systematic and Evolutionary Microbiology 67 (9) :3174-3181.

://WOS:000417836100006
2017 Pontes,A., Rohl,A., MaLdonado,C., Yurkov,A.M., Sampaio,J.P. ( 2017 ) Cryptotrichosporon argae sp nov., Cryptotrichosporon brontae sp nov and Cryptotrichosporon steropae sp nov., isolated from forest soils International Journal of Systematic and Evolutionary Microbiology 67 (9) :3610-3614.

://WOS:000417836100079
2017 Schulz,M., Sicker,D., Schackow,O., Hennig,L., Yurkov,A., Siebers,M., Hofmann,D., Disko,U., Ganimede,C., Mondani,L., Tabaglio,V., Marocco,A. ( 2017 ) Interspecies-cooperations of abutilon theophrasti with root colonizing microorganisms disarm BOA-OH allelochemicals Plant Signaling & Behavior 12 (8)

://WOS:000428142500015
2017 Tindall,B.J., Sutton,G., Garrity,G.M. ( 2017 ) Enterobacter aerogenes Hormaeche and Edwards 1960 (Approved Lists 1980) and Klebsiella mobilis Bascomb et al. 1971 (Approved Lists 1980) share the same nomenclatural type (ATCC 13048) on the Approved Lists and are homotypic synonyms, with consequences for the name Klebsiella mobilis Bascomb et al. 1971 (Approved Lists 1980) International Journal of Systematic and Evolutionary Microbiology 67 (2) :502-504.

://WOS:000397002800051
2017 Wijayawardene,N.N., Hyde,K.D., Rajeshkumar,K.C., Hawksworth,D.L., Madrid,H., Kirk,P.M., Braun,U., Singh,R.V., Crous,P.W., Kukwa,M., Lucking,R., Kurtzman,C.P., Yurkov,A., Haelewaters,D., Aptroot,A., Lumbsch,H.T., Timdal,E., Ertz,D., Etayo,J., Phillips,A.J.L., Groenewald,J.Z., Papizadeh,M., Selbmann,L., Dayarathne,M.C., Weerakoon,G., Jones,E.B.G., Suetrong,S., Tian,Q., Castaneda-Ruiz,R.F., Bahkali,A.H., Pang,K.L., Tanaka,K., Dai,D.Q., Sakayaroj,J., Hujslova,M., Lombard,L., Shenoy,B.D., Suija,A., Maharachchikumbura,S.S.N., Thambugala,K.M., Wanasinghe,D.N., Sharma,B.O., Gaikwad,S., Pandit,G., Zucconi,L., Onofri,S., Egidi,E., Raja,H.A., Kodsueb,R., Caceres,M.E.S., Perez-Ortega,S., Fiuza,P.O., Monteiro,J.S., Vasilyeva,L.N., Shivas,R.G., Prieto,M., Wedin,M., Olariaga,I., Lateef,A.A., Agrawal,Y., Fazeli,S.A.S., Amoozegar,M.A., Zhao,G.Z., Pfliegler,W.P., Sharma,G., Oset,M., Abdel-Wahab,M.A., Takamatsu,S., Bensch,K., deSilva,N.I., DeKesel,A., Karunarathna,A., Boonmee,S., Pfister,D.H., Lu,Y.Z., Luo,Z.L., Boonyuen,N., Daranagama,D.A., Senanayake,I.C., Jayasiri,S.C., Samarakoon,M.C., Zeng,X.Y., Doilom,M., Quijada,L., Rampadarath,S., Heredia,G., Dissanayake,A.J., Jayawardana,R.S., Perera,R.H., Tang,L.Z., Phukhamsakda,C., Hernandez-Restrepo,M., Ma,X.Y., Tibpromma,S., Gusmao,L.F.P., Weerahewa,D., Karunarathna,S.C. ( 2017 ) Notes for genera: Ascomycota Fungal Diversity 86 (1) :1-594.

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2017 Yurkov,A.M., Dauchy,D., Peter,G. ( 2017 ) Meyerozyma amylolytica sp nov from temperate deciduous trees and the transfer of five Candida species to the genus Meyerozyma International Journal of Systematic and Evolutionary Microbiology 67 (10) :3977-3981.

://WOS:000413484800045
2017 Hahn,M.W., Huymann,L.R., Koll,U., Schmidt,J., Lang,E., Hoetzinger,M. ( 2017 ) Polynucleobacter wuianus sp. nov., a free-living freshwater bacterium affiliated with the cryptic species complex PnecC Int J Syst Evol Microbiol 67 (2) :379-385.

https://www.ncbi.nlm.nih.gov/pubmed/27902302