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Publications of the DSMZ

Here you will find a complete list of all scientific publications.

Publications
2014 Bananej,K., Kianfar,N., Winter,S., Menzel,W. ( 2014 ) The status of Cucumber vein yellowing virus in Iran Phytopathologia Mediterranea 53 (2) :269-276.

2014 Abraham,A.D., Menzel,W., Bekele,B., Winter,S. ( 2014 ) A novel combination of a new umbravirus, a new satellite RNA and potato leafroll virus causes tobacco bushy top disease in Ethiopia Arch Virol 159 :3395-3399.

http://www.ncbi.nlm.nih.gov/pubmed/25119677
2014 Legg,J., Somado,E.A., Barker,I., Beach,L., Ceballos,H., Cuellar,W., Elkhoury,W., Gerling,D., Helsen,J., Hershey,C., Jarvis,A., Kulakow,P., Kumar,L., Lorenzen,J., Lynam,J., McMahon,M., Maruthi,G., Miano,D., Mtunda,K., Natwuruhunga,P., Okogbenin,E., Pezo,P., Terry,E., ThieleG., Thresh,M., Wadsworth,J., Walsh,S., Winter,S., Tohme,J., Fauquet,C. ( 2014 ) A global alliance declaring war on cassava viruses in Africa Food Security 6 :231-248.

2014 Boonham,N., Kreuze,J., Winter,S., vanderVlugt,R., Bergervoet,J., Tomlinson,J., Mumford,R. ( 2014 ) Methods in virus diagnostics: From ELISA to next generation sequencing Virus Res

http://www.ncbi.nlm.nih.gov/pubmed/24361981
2014 Gilioli,G., Pasquali,S., Parisi,S., Winter,S. ( 2014 ) Modelling the potential distribution of Bemisia tabaci in Europe in light of the climatic change scenario Pest Manag Sci

2014 Menzel,W., Thottappilly,G., Winter,S. ( 2014 ) Characterization of an isometric virus isolated from yam (Dioscorea rotundata) in Nigeria suggests that it belongs to a new species in the genus Aureusvirus Arch Virol 159 (3) :603-6.

http://www.ncbi.nlm.nih.gov/pubmed/24085328
2014 Bananej,K., Kianfar,N., Vahdat,A., Winter,S., Menzel,W. ( 2014 ) Molecular and Serological Identification of Cucumber leaf spot virus in Iran Journal of Phytopathology 162 :205-208.

http://dx.doi.org/10.1111/jph.12178
2014 Eckweiler,D., Bunk,B., Spröer,C., Overmann,J., Häussler,S. ( 2014 ) Complete Genome Sequence of Highly Adherent Pseudomonas aeruginosa Small-Colony Variant SCV20265 Genome announcements 2 (1)

http://www.ncbi.nlm.nih.gov/pubmed/24459283
2014 Tielen,P., Wibberg,D., Blom,J., Rosin,N., Meyer,A.K., Bunk,B., Schobert,M., Tüpker,R., Schatschneider,S., Rückert,C., Albersmeier,A., Goesmann,A., Vorhölter,F.J., Jahn,D., Pühler,A. ( 2014 ) Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection Genome announcements 2 (1)

http://www.ncbi.nlm.nih.gov/pubmed/24459261
2014 Söhngen,C., Bunk,B., Podstawka,A., Gleim,D., Overmann,J. ( 2014 ) BacDive--the Bacterial Diversity Metadatabase Nucleic acids research 42 (1) :D592-D599.

http://www.ncbi.nlm.nih.gov/pubmed/24214959
2014 Zarparvar,P., Amoozegar,M.A., Moshtaghi,N.M., Schumann,P., Ventosa,A. ( 2014 ) Salinithrix halophila gen. nov, sp. nov., a halophilic bacterium in the family Thermoactinomycetaceae International journal of systematic and evolutionary microbiology

http://www.ncbi.nlm.nih.gov/pubmed/25249565
2014 Liu,B., Liu,G.H., Sengonca,C., Schumann,P., Wang,M.K., Tang,J.Y., Chen,M.C. ( 2014 ) Bacillus cihuensis sp. nov., isolated from rhizosphere soil of a plant in the Cihu area of Taiwan Antonie Van Leeuwenhoek

http://www.ncbi.nlm.nih.gov/pubmed/25256951
2014 Shahinpei,A., Amoozegar,M.A., ShahzadehFazeli,S.A., Schumann,P., Ventosa,A. ( 2014 ) Salinispirillum marinum gen. nov., sp. nov., a haloalkaliphilic bacterium in the family Saccharospirillaceae International journal of systematic and evolutionary microbiology

http://www.ncbi.nlm.nih.gov/pubmed/25062697
2014 Amoozegar,M.A., Bagheri,M., Didari,M., Mehrshad,M., Schumann,P., Spröer,C., Sanchez-Porro,C., Ventosa,A. ( 2014 ) Aquibacillus halophilus gen. nov., sp. nov., a moderately halophilic bacterium from a hypersaline lake, and reclassification of Virgibacillus koreensis as Aquibacillus koreensis comb. nov. and Virgibacillus albus as Aquibacillus albus comb. nov International journal of systematic and evolutionary microbiology

http://www.ncbi.nlm.nih.gov/pubmed/25062698
2014 Amoozegar,M.A., Shahinpei,A., Akhavan,S.A., Makhdoumi-Kakhki,A., Seyedmahdi,S.S., Schumann,P., Ventosa,A. ( 2014 ) Pseudomonas salegens sp. nov., a halophilic member of the genus Pseudomonas isolated from a wetland International journal of systematic and evolutionary microbiology

http://www.ncbi.nlm.nih.gov/pubmed/25062699
2014 Aravena-Román,M., Inglis,T.J., Siering,C., Schumann,P., Yassin,A.F. ( 2014 ) Canibacter oris gen. nov., sp. nov., isolated from an infected human wound International journal of systematic and evolutionary microbiology 64 (Pt 5) :1635-1640.

http://www.ncbi.nlm.nih.gov/pubmed/24510975
2014 Ferreira,T., vanReenen,C.A., Endo,A., Tailliez,P., Pages,S., Spröer,C., Malan,A., Dicks,L. ( 2014 ) Description of Photorhabdus zealandica sp. nov., a symbiont of the entomopathogenic nematode Heterorhabditis zealandica International journal of systematic and evolutionary microbiology

http://www.ncbi.nlm.nih.gov/pubmed/24478206
2014 Eckweiler,D., Bunk,B., Spröer,C., Overmann,J., Haussler,S. ( 2014 ) Complete Genome Sequence of Highly Adherent Pseudomonas aeruginosa Small-Colony Variant SCV20265 Genome announcements 2 (1)

http://www.ncbi.nlm.nih.gov/pubmed/24459283
2014 Moshtaghi,N.M., Ramezani,M., Amoozegar,M.A., ShahzadehFazeli,S.A., Schumann,P., Spröer,C., Sánchez-Porro,C., Ventosa,A. ( 2014 ) Alloactinosynnema iranicum sp. nov., a novel rare actinomycete isolated from Iranian hypersaline wetland and emended description of the genus Alloactinosynnema International journal of systematic and evolutionary microbiology

http://www.ncbi.nlm.nih.gov/pubmed/24408526
2014 Michaelis,M., Rothweiler,F., Nerreter,T., vanRikxoort,M., Zehner,R., Dirks,W.G., Wiese,M., Cinatl,J.,Jr. ( 2014 ) Association between acquired resistance to PLX4032 (vemurafenib) and ATP-binding cassette transporter expression BMC Res Notes 7 :710.

http://www.ncbi.nlm.nih.gov/pubmed/25300205
2014 Dirks,W.G., Uphoff,C.C. ( 2014 ) Quality control essentials in human cell culture: Cell line cross-contamination and microbiological infections Animal Cell Biotechnology in Biologics Production :102-113.

2014 Foesel,B.U., Nagele,V., Naether,A., Wust,P.K., Weinert,J., Bonkowski,M., Lohaus,G., Polle,A., Alt,F., Oelmann,Y., Fischer,M., Friedrich,M.W., Overmann,J. ( 2014 ) Determinants of Acidobacteria activity inferred from the relative abundances of 16S rRNA transcripts in German grassland and forest soils Environmental microbiology 16 (3) :658-675.

http://www.ncbi.nlm.nih.gov/pubmed/23802854

2014 MacLeod,R.A.F., Drexler,H.G. ( 2014 ) Cell line monitoring: Molecular cytogenetic characterization Animal Cell Biotechnology in Biologics Production :87-101.

2014 Huber,K.J., Wüst,P.K., Rohde,M., Overmann,J., Foesel,B.U. ( 2014 ) Aridibacter famidurans gen. nov., sp. nov. and Aridibacter kavangonensis sp. nov., two novel members of subdivision 4 of the Acidobacteria isolated from semiarid savannah soil International journal of systematic and evolutionary microbiology 64 (Pt 6) :1866-1875.

http://www.ncbi.nlm.nih.gov/pubmed/24573163

2014 Michaelis,M., Selt,F., Rothweiler,F., Loschmann,N., Nusse,B., Dirks,W.G., Zehner,R., Cinatl,J.,Jr. ( 2014 ) Aurora kinases as targets in drug-resistant neuroblastoma cells PLoS One 9 (9) :e108758.

http://www.ncbi.nlm.nih.gov/pubmed/25268132
2014 Foesel,B.U., Nagele,V., Naether,A., Wust,P.K., Weinert,J., Bonkowski,M., Lohaus,G., Polle,A., Alt,F., Oelmann,Y., Fischer,M., Friedrich,M.W., Overmann,J. ( 2014 ) Determinants of Acidobacteria activity inferred from the relative abundances of 16S rRNA transcripts in German grassland and forest soils Environmental microbiology 16 (3) :658-675.

http://www.ncbi.nlm.nih.gov/pubmed/23802854

2014 Nagel,S., Meyer,C., Kaufmann,M., Drexler,H.G., MacLeod,R.A. ( 2014 ) Deregulated FOX genes in Hodgkin lymphoma Genes Chromosomes Cancer 53 (11) :917-33.

http://www.ncbi.nlm.nih.gov/pubmed/25043849
2014 Huber,K.J., Wüst,P.K., Rohde,M., Overmann,J., Foesel,B.U. ( 2014 ) Aridibacter famidurans gen. nov., sp. nov. and Aridibacter kavangonensis sp. nov., two novel members of subdivision 4 of the Acidobacteria isolated from semiarid savannah soil International journal of systematic and evolutionary microbiology 64 (Pt 6) :1866-1875.

http://www.ncbi.nlm.nih.gov/pubmed/24573163

2014 Roesner,L.M., Mielke,C., Faehnrich,S., Merkhoffer,Y., Dittmar,K.E., Drexler,H.G., Dirks,W.G. ( 2014 ) Localization of MLH3 at the centrosomes Int J Mol Sci 15 (8) :13932-7.

http://www.ncbi.nlm.nih.gov/pubmed/25116689
2014 Wittmann,J., Dreiseikelmann,B., Rohde,C., Rohde,M., Sikorski,J. ( 2014 ) Isolation and Characterization of Numerous Novel Phages Targeting Diverse Strains of the Ubiquitous and Opportunistic Pathogen Achromobacter xylosoxidans PLoS One 9 (1) :e86935.

http://www.ncbi.nlm.nih.gov/pubmed/24466294

2014 InternationalCellLineAuthenticationCommittee,i.D.,W.G.,MacLeod,R.A.F.,Drexler,H.G.and1 ( 2014 ) Cell line cross-contamination: WSU-CLL is a known derivative of REH and is unsuitable as a model for chronic lymphocytic leukaemia Leuk Res 38 (8) :999-1001.

http://www.ncbi.nlm.nih.gov/pubmed/24923861
2014 Meissner,T., Eckelt,E., Basler,T., Meens,J., Heinzmann,J., Suwandi,A., Oelemann,W.M., Trenkamp,S., Holst,O., Weiss,S., Bunk,B., Spröer,C., Gerlach,G.F., Goethe,R. ( 2014 ) The Mycobacterium avium ssp. paratuberculosis specific mptD gene is required for maintenance of the metabolic homeostasis necessary for full virulence in mouse infections Frontiers in cellular and infection microbiology 4 :110.

http://www.ncbi.nlm.nih.gov/pubmed/25177550

2014 Nagel,S., Ehrentraut,S., Meyer,C., Kaufmann,M., Drexler,H.G., MacLeod,R.A. ( 2014 ) Oncogenic deregulation of NKL homeobox gene MSX1 in mantle cell lymphoma Leuk Lymphoma 55 (8) :1893-903.

http://www.ncbi.nlm.nih.gov/pubmed/24237447
2014 Breider,S., Scheuner,C., Schumann,P., Fiebig,A., Petersen,J., Pradella,S., Klenk,H.P., Brinkhoff,T., Göker,M. ( 2014 ) Genome-scale data suggest reclassifications in the Leisingera-Phaeobacter cluster including proposals for Sedimentitalea gen. nov. and Pseudophaeobacter gen. nov Frontiers in microbiology 5 :416.

http://www.ncbi.nlm.nih.gov/pubmed/25157246

2014 Uphoff,C.C., Drexler,H.G. ( 2014 ) Eradication of Mycoplasma contaminations from cell cultures Curr Protoc Mol Biol 106 :28 5 1-28 5 12.

http://www.ncbi.nlm.nih.gov/pubmed/24733241
2014 Lasker,B.A., Bell,M., Klenk,H.P., Spröer,C., Schumann,C., Schumann,P., Brown,J.M. ( 2014 ) Nocardia vulneris sp. nov., isolated from wounds of human patients in North America Antonie Van Leeuwenhoek 106 (3) :543-553.

http://www.ncbi.nlm.nih.gov/pubmed/25015412

2014 Uphoff,C.C., Drexler,H.G. ( 2014 ) Detection of Mycoplasma contamination in cell cultures Curr Protoc Mol Biol 106 :28 4 1-28 4 14.

http://www.ncbi.nlm.nih.gov/pubmed/24733240
2014 SinningheDamste,J.S., Rijpstra,W.I., Hopmans,E.C., Foesel,B.U., Wüst,P.K., Overmann,J., Tank,M., Bryant,D.A., Dunfield,P.F., Houghton,K., Stott,M.B. ( 2014 ) Ether- and ester-bound iso-diabolic acid and other lipids in members of acidobacteria subdivision 4 Applied and environmental microbiology 80 (17) :5207-5218.

http://www.ncbi.nlm.nih.gov/pubmed/24928878

2014 Salaverria,I., Martin-Guerrero,I., Wagener,R., Kreuz,M., Kohler,C.W., Richter,J., Pienkowska-Grela,B., Adam,P., Burkhardt,B., Claviez,A., Damm-Welk,C., Drexler,H.G., Hummel,M., Jaffe,E.S., Kuppers,R., Lefebvre,C., Lisfeld,J., Loffler,M., Macleod,R.A., Nagel,I., Oschlies,I., Rosolowski,M., Russell,R.B., Rymkiewicz,G., Schindler,D., Schlesner,M., Scholtysik,R., Schwaenen,C., Spang,R., Szczepanowski,M., Trumper,L., Vater,I., Wessendorf,S., Klapper,W., Siebert,R., MolecularMechanismsinMalignantLymphomaNetwork,P., Berlin-Frankfurt-MunsterNon-HodgkinLymphoma,G. ( 2014 ) A recurrent 11q aberration pattern characterizes a subset of MYC-negative high-grade B-cell lymphomas resembling Burkitt lymphoma Blood 123 (8) :1187-98.

http://www.ncbi.nlm.nih.gov/pubmed/24398325
2014 Hamilton,T.L., Bovee,R.J., Thiel,V., Sattin,S.R., Mohr,W., Schaperdoth,I., Vogl,K., Gilhooly,W.P.,III, Lyons,T.W., Tomsho,L.P., Schuster,S.C., Overmann,J., Bryant,D.A., Pearson,A., Macalady,J.L. ( 2014 ) Coupled reductive and oxidative sulfur cycling in the phototrophic plate of a meromictic lake Geobiology 12 (5) :451-468.

http://www.ncbi.nlm.nih.gov/pubmed/24976102

2014 Verkley,G.J., Dukik,K., Renfurm,R., Göker,M., Stielow,J.B. ( 2014 ) Novel genera and species of coniothyrium-like fungi in Montagnulaceae (Ascomycota) Persoonia 32 :25-51.

http://www.ncbi.nlm.nih.gov/pubmed/25264382

2014 Gao,X.Y., Zhi,X.Y., Li,H.W., Klenk,H.P., Li,W.J. ( 2014 ) Comparative genomics of the bacterial genus Streptococcus illuminates evolutionary implications of species groups PLoS One 9 (6) :e101229.

http://www.ncbi.nlm.nih.gov/pubmed/24977706

2013 Brack,C., Mikolasch,A., Pukall,R., Schumann,P., Köster,M., Schauer,F. ( 2013 ) Bacteriolytic Bacillus species isolated from brackish waters of the Southern Baltic Sea Mar Biol

2013 Rohde,C., Smith,D., Martin,D., Fritze,D., Stalpers,J. ( 2013 ) Code of Conduct on Biosecurity for Biological Resource Centres (BRCs) - Procedural implementation Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23667143
2013 Meklat,A., Bouras,N., Zitouni,A., Mathieu,F., Lebrihi,A., Schumann,P., Sproer,C., Klenk,H.P., Sabaou,N. ( 2013 ) Actinopolyspora mzabensis sp. nov., a novel halophilic actinomycete isolated from a Saharan soil of Algeria Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23667146
2013 Spring,S., Riedel,T., Spröer,C., Yan,S., Harder,J., Fuchs,B.M. ( 2013 ) Taxonomy and evolution of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria: description of Luminiphilus syltensis gen. nov., sp. nov., reclassification of Haliea rubra as Pseudohaliea rubra gen. nov., comb. nov., and emendation of Chromatocurvus halotolerans BMC Microbiol 13 :118.

http://www.ncbi.nlm.nih.gov/pubmed/23705883
2013 Spring,S., Riedel,T. ( 2013 ) Mixotrophic growth of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria is carbon-starvation independent and correlates with the type of carbon source and oxygen availability BMC Microbiol 13 :117.

http://www.ncbi.nlm.nih.gov/pubmed/23705861
2013 Montero-Calasanz,M.D., Göker,M., Pötter,G., Rohde,M., Spröer,C., Schumann,P., Gorbushina,A.A., Klenk,H.P. ( 2013 ) Geodermatophilus africanus sp. nov., a halotolerant actinomycete isolated from Saharan desert sand Antonie Van Leeuwenhoek

http://www.ncbi.nlm.nih.gov/pubmed/23723018
2013 Meier-Kolthoff,J.P., Göker,M., Spröer,C., Klenk,H.P. ( 2013 ) When should a DDH experiment be mandatory in microbial taxonomy? Arch Microbiol 195 (6) :413-8.

http://www.ncbi.nlm.nih.gov/pubmed/23591456
2013 Meklat,A., Bouras,N., Zitouni,A., Mathieu,F., Lebrihi,A., Schumann,P., Spröer,C., Klenk,H.P., Sabaou,N. ( 2013 ) Actinopolyspora righensis sp. nov., a novel halophilic actinomycete isolated from Saharan soil in Algeria Antonie Van Leeuwenhoek

http://www.ncbi.nlm.nih.gov/pubmed/23754661
2013 Li,H.W., Zhi,X.Y., Yao,J.C., Zhou,Y., Tang,S.K., Klenk,H.P., Zhao,J., Li,W.J. ( 2013 ) Comparative genomic analysis of the genus Nocardiopsis provides new insights into its genetic mechanisms of environmental adaptability PLoS One 8 (4) :e61528.

http://www.ncbi.nlm.nih.gov/pubmed/23626695
2013 Hernandez-Sanchez,V., Lang,E., Wittich,R.M. ( 2013 ) The Three-Species Consortium of Genetically Improved Strains Cupriavidus necator RW112, Burkholderia xenovorans RW118, and Pseudomonas pseudoalcaligenes RW120 Grows with Technical Polychlorobiphenyl, Aroclor 1242 Front Microbiol 4 :90.

http://www.ncbi.nlm.nih.gov/pubmed/23658554
2013 Cheng,J., Chen,W., Huo-Zhang,B., Nimaichand,S., Zhou,E.M., Lu,X.H., Klenk,H.P., Li,W.J. ( 2013 ) Microlunatus cavernae sp. nov., a novel actinobacterium isolated from Alu ancient cave, Yunnan, south-west China Antonie Van Leeuwenhoek 104 (1) :95-101.

http://www.ncbi.nlm.nih.gov/pubmed/23653120
2013 Smith,S., Fritze,D., Stackebrandt,E. ( 2013 ) Public Service Collections and Biological Resource Centers of Microorganisms The Prokaryotes :267-304.

2013 Göker,M., Klenk,H.-P. ( 2013 ) Phylogeny-driven target selection for genome-sequencing (and other) projects Stand Genomic Sci 8 :360-374.

2013 Stackebrandt,E., Chertkov,O., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.-F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Pan,C., Rohde,M., Gronow,S., Göker,M., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Woyke,T., Kyrpides,N.C., Klenk,H.-P. ( 2013 ) Complete genome sequence of the free-living aerobic spirochete Turneriella parva type strain (HT) Stand Genomic Sci 8 :228-238.

2013 Huntemann,M., Stackebrandt,E., Held,B., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Rohde,M., Gronow,S., Göker,M., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Woyke,T., Hugenholtz,P., Kyrpides,N.C., Klenk,H.-P., Lapidus,A. ( 2013 ) Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055T) Stand Genomic Sci 8 :177-187.

2013 Liolios,K., Abt,B., Scheuner,C., Teshima,H., Held,B., Lapidus,A., Nolan,M., Lucas,S., Deshpande,S., Cheng,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Rohde,M., Tindall,B.J., Detter,J.C., Göker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Woyke,T., Klenk,H.-P., Kyrpides,N.C. ( 2013 ) Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692T) from the alkaline Lake Magadi in the East African Rift. Stand Genomic Sci 7 :165-176.

2013 Abt,B., Göker,M., Scheuner,C., Han,C., Lu,M., Misra,M., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Chang,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Jeffries,C.D., Rohde,M., Spring,S., Gronow,S., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Woyke,T., Klenk,H.-P. ( 2013 ) Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema. Stand Genomic Sci 8 :88-105.

2013 Visser,M., Worm,P., Muyzer,G., Pereira,I.A.C., Schaap,P.J., Plugge,C.M., Kuever,J., Parshina,S.N., Nazina,T.N., Ivanova,A.E., Bernier-Latmani,R., Goodwin,L.A., Kyrpides,N.C., Woyke,T., Chain,P., Davenport,K.W., Spring,S., Klenk,H.-P., Stams,A. ( 2013 ) Genome analysis of Desulfotomaculum kuznetsovii strain 17T reveals a physiological similarity with Pelotomaculum thermopropionicum SIT Stand Genomic Sci 8 :69-87.

2013 Mavromatis,K., Stackebrandt,E., Held,B., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.-F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Rohde,M., Spring,S., Göker,M., Woyke,T., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.-P., Kyrpides,N. ( 2013 ) Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGAT). Stand Genomic Sci 8 :47-57.

2013 Stackebrandt,E., Chertkov,O., Lapidus,A., Nolan,M., Lucas,S., Han,C., Cheng,J.F., Tapia,R., Goodwin,L.A., Bruce,D., Pitluck,S., Liolios,K., Mavromatis,K., Pagani,I., Ivanova,N., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Rohde,M., Tindall,B.J., Göker,M., Woyke,T., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.-P., Kyrpides,N. ( 2013 ) High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5T) Stand Genomic Sci 8 :37-46.

2013 Vaas,L.A., Sikorski,J., Hofner,B., Fiebig,A., Buddruhs,N., Klenk,H.P., Göker,M. ( 2013 ) opm: an R package for analysing OmniLog(R) phenotype microarray data Bioinformatics

http://www.ncbi.nlm.nih.gov/pubmed/23740744
2013 Mavromatis,K., Stackebrandt,E., Munk,C., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.-F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Rohde,M., Gronow,S., Göker,M., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.-P., Woyke,T. ( 2013 ) Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437T) Stand Genomic Sci 8 :26-36.

2013 Foesel,B.U., Nagele,V., Naether,A., Wust,P.K., Weinert,J., Bonkowski,M., Lohaus,G., Polle,A., Alt,F., Oelmann,Y., Fischer,M., Friedrich,M.W., Overmann,J. ( 2013 ) Determinants of Acidobacteria activity inferred from the relative abundances of 16S rRNA transcripts in German grassland and forest soils Environ Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23802854
2013 Stackebrandt,E., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.-F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Chang,Y.-J., Land,M., Hauser,L., Rohde,M., Pukall,R., Göker,M., Detter,J.C., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.-P. ( 2013 ) Complete genome sequence of Coriobacterium glomerans type strain (PW2T) from the midgut of Pyrrhocoris apterus L. (red soldier bug) Stand Genomic Sci 8 :15-25.

2013 Freese,H.M., Martin-Creuzburg,D. ( 2013 ) Food quality of mixed bacteria-algae diets for Daphnia magna Hydrobiologia

2013 Liolios,K., Abt,B., Scheuner,C., Teshima,H., Held,B., Lapidus,A., Nolan,M., Lucas,S., Deshpande,S., Cheng,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Rohde,M., Tindall,B.J., Detter,J.C., Göker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Woyke,T., Klenk,H.-P., Kyrpides,N.C. ( 2013 ) Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692T) from the alkaline Lake Magadi in the East African Rift. Stand Genomic Sci 7 :165-176.

2013 Abt,B., Göker,M., Scheuner,C., Han,C., Lu,M., Misra,M., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Chang,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Jeffries,C.D., Rohde,M., Spring,S., Gronow,S., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Woyke,T., Klenk,H.-P. ( 2013 ) Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema. Stand Genomic Sci 8 :88-105.

2013 Foesel,B.U., Rohde,M., Overmann,J. ( 2013 ) Blastocatella fastidiosa gen. nov., sp. nov., isolated from semiarid savanna soil - the first described species of Acidobacteria subdivision 4 Syst Appl Microbiol 36 (2) :82-89.

http://www.ncbi.nlm.nih.gov/pubmed/23266188
2013 Freese,H.M., Martin-Creuzburg,D. ( 2013 ) Food quality of mixed bacteria-algae diets for Daphnia magna Hydrobiologia

2013 Losey,N.A., Stevenson,B.S., Verbarg,S., Rudd,S., Moore,E.R., Lawson,P.A. ( 2013 ) Fontimonas thermophila gen. nov., sp. nov., a moderately thermophilic bacterium isolated from a freshwater hot spring, and proposal of Solimonadaceae fam. nov. to replace Sinobacteraceae Zhou et al. 2008 Int J Syst Evol Microbiol 63 (Pt 1) :254-9.

http://www.ncbi.nlm.nih.gov/pubmed/22407788
2013 Lal,D., Khan,F., Gupta,S.K., Schumann,P., Lal,R. ( 2013 ) Edaphobacillus lindanitolerans gen. nov., sp. nov., isolated from hexachlorocyclohexane (HCH) contaminated soil. J Basic Microbiol :1-8.

http://www.ncbi.nlm.nih.gov/pubmed/23322487
2013 Bandyopadhyay,S., Schumann,P., Das,S.K. ( 2013 ) Pannonibacter indica sp. nov., a highly arsenate-tolerant bacterium isolated from a hot spring in India. Arch Microbiol 195 (1) :1-8.

http://www.ncbi.nlm.nih.gov/pubmed/22940883
2013 Fiebig,A., Pradella,S., Petersen,J., Michael,V., Päuker,O., Rohde,M., Göker,M., Klenk,H.-P., Wagner-Döbler,I. ( 2013 ) Genome of the marine alphaproteobacterium Hoeflea phototrophica type strain (DFL-43T) Stand Genomic Sci 7 :440-448.

2013 Fiebig,A., Pradella,S., Petersen,J., Päuker,O., Michael,V., Lünsdorf,H., Göker,M., Klenk,H.-P., Wagner-Döbler,I. ( 2013 ) Genome of the R-body producing marine alphaproteobacterium Labrenzia alexandrii type strain (DFL-11T) Stand Genomic Sci 7 :413-426.

2013 Zhu,W.Y., Zhang,J.L., Qin,Y.L., Xiong,Z.J., Zhang,D.F., Klenk,H.P., Zhao,L.X., Xu,L.H., Li,W.J. ( 2013 ) Blastococcus endophyticus sp. nov., a novel actinobacterium isolated from Camptotheca acuminata Decne Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23475341
2013 Tortoli,E., Gitti,Z., Klenk,H.P., Lauria,S., Mannino,R., Mantegani,P., Mariottini,A., Neonakis,I. ( 2013 ) Survey of 150 strains belonging to the Mycobacterium terrae complex and description of Mycobacterium engbaekii sp. nov., Mycobacterium heraklionense sp. nov. and Mycobacterium longobardum sp. nov Int J Syst Evol Microbiol 63 (Pt 2) :401-11.

http://www.ncbi.nlm.nih.gov/pubmed/22447702
2013 Schumann,P., Pukall,R., Sproer,C., Stackebrandt,E. ( 2013 ) Reclassification of Koreibacter algae as a later heterotypic synonym of Paraoerskovia marina and emended descriptions of the genus Paraoerskovia Khan et al. 2009 and of Paraoerskovia marina Khan et al. 2009 Int J Syst Evol Microbiol 63 (Pt 1) :219-23.

http://www.ncbi.nlm.nih.gov/pubmed/22389283
2013 Hanafy,M.S., El-Banna,A., Schumacher,H.M., Jacobsen,H.J., Hassan,F.S. ( 2013 ) Enhanced tolerance to drought and salt stresses in transgenic faba bean (Vicia faba L.) plants by heterologous expression of the PR10a gene from potato Plant Cell Rep 32 (5) :663-74.

http://www.ncbi.nlm.nih.gov/pubmed/23455709
2013 Montero-Calasanz,M.D., Goker,M., Potter,G., Rohde,M., Sproer,C., Schumann,P., Gorbushina,A.A., Klenk,H.P. ( 2013 ) Geodermatophilus normandii sp. nov., isolated from Saharan desert sand Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23543496
2013 Mohammadipanah,F., Hamedi,J., Goker,M., Fiebig,A., Pukall,R., Sproer,C., Klenk,H.P. ( 2013 ) Kribbella shirazensis sp. nov., isolated from soil of Shiraz in Iran Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23524355
2013 Lang,E., Schumann,P., Adler,S., Sproer,C., Sahin,N. ( 2013 ) Azorhizobium oxalatiphilum sp. nov., and emended description of the genus Azorhizobium Int J Syst Evol Microbiol 63 (Pt 4) :1505-1511.

http://www.ncbi.nlm.nih.gov/pubmed/22888185
2013 Gaboyer,F., Tindall,B.J., Ciobanu,M.C., Duthoit,F., LeRomancer,M., Alain,K. ( 2013 ) Phaeobacter leonis sp. nov., a novel alphaproteobacterium from Mediterranean Sea sediments Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23475346
2013 Ezeoke,I., Klenk,H.P., Pötter,G., Schumann,P., Moser,B.D., Lasker,B.A., Nicholson,A., Brown,J.M. ( 2013 ) Nocardia amikacinitolerans sp. nov., an amikacin-resistant human pathogen Int J Syst Evol Microbiol 63 (Pt 3) :1056-1061.

http://www.ncbi.nlm.nih.gov/pubmed/22707533
2013 Konstantinidis,K., Stackebrandt,E. ( 2013 ) Defining taxonomic ranks. The Prokaryotes :267-304.

2013 Yarza,P., Sproer,C., Swiderski,J., Mrotzek,N., Spring,S., Tindall,B.J., Gronow,S., Pukall,R., Klenk,H.P., Lang,E., Verbarg,S., Crouch,A., Lilburn,T., Beck,B., Unosson,C., Cardew,S., Moore,E.R., Gomila,M., Nakagawa,Y., Janssens,D., DeVos,P., Peiren,J., Suttels,T., Clermont,D., Bizet,C., Sakamoto,M., Iida,T., Kudo,T., Kosako,Y., Oshida,Y., Ohkuma,M., D,R.A., Spieck,E., PommereningRoeser,A., Figge,M., Park,D., Buchanan,P., Cifuentes,A., Munoz,R., Euzeby,J.P., Schleifer,K.H., Ludwig,W., Amann,R., Glockner,F.O., Rossello-Mora,R. ( 2013 ) Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names Syst Appl Microbiol 36 (1) :69-73.

http://www.ncbi.nlm.nih.gov/pubmed/23410935
2013 Verma,P., Seong,C.N., Pandey,P.K., Bhonde,R.R., Sproer,C., Rohde,M., Shouche,Y.S. ( 2013 ) Bhargavaea indica sp. nov., a member of the phylum Firmicutes, isolated from Arabian Sea sediment J Microbiol 51 (1) :36-42.

http://www.ncbi.nlm.nih.gov/pubmed/23456710
2013 Riedel,T., Gomez-Consarnau,L., Tomasch,J., Martin,M., Jarek,M., Gonzalez,J.M., Spring,S., Rohlfs,M., Brinkhoff,T., Cypionka,H., Goker,M., Fiebig,A., Klein,J., Goesmann,A., Fuhrman,J.A., Wagner-Dobler,I. ( 2013 ) Genomics and physiology of a marine flavobacterium encoding a proteorhodopsin and a xanthorhodopsin-like protein PLoS One 8 (3) :e57487.

http://www.ncbi.nlm.nih.gov/pubmed/23526944
2013 Meklat,A., Bouras,N., Zitouni,A., Mathieu,F., Lebrihi,A., Schumann,P., Sproer,C., Klenk,H.P., Sabaou,N. ( 2013 ) Actinopolyspora saharensis sp. nov., a novel halophilic actinomycete isolated from a Saharan soil of Algeria Antonie Van Leeuwenhoek 103 (4) :771-776.

http://www.ncbi.nlm.nih.gov/pubmed/23196893
2013 Petersen,J., Frank,O., Göker,M., Pradella,S. ( 2013 ) Extrachromosomal, extraordinary and essential-the plasmids of the Roseobacter clade. Appl Microbiol Biotechnol. 97 (7) :2805-2815.

http://www.ncbi.nlm.nih.gov/pubmed/23435940
2013 Montero-Calasanz,M.C., Göker,M., Rohde,M., Schumann,P., Pötter,G., Spröer,C., Gorbushina,A.A., Klenk,H.-P. ( 2013 ) Geodermatophilus siccatus sp. nov., isolated from arid sand of the Saharan desert in Chad. Antonie Van Leeuwenhoek 103 (3) :449-456.

http://www.ncbi.nlm.nih.gov/pubmed/23076796
2013 Montero-Calasanz,M.C., Göker,M., Pötter,G., Rohde,M., Spröer,C., Schumann,P., Gorbushina,A.A., Klenk,H.P. ( 2013 ) Geodermatophilus saharensis sp. nov., isolated from sand of the Saharan desert in Chad Arch Microbiol 195 (3) :153-159.

http://www.ncbi.nlm.nih.gov/pubmed/23269498
2013 Montero-Calasanz,M.C., Göker,M., Broughton,W.J., Cattaneo,A., Favet,J., Pötter,G., Rohde,M., Spröer,C., Schumann,P., Klenk,H.-P., Gorbushina,A.A. ( 2013 ) Geodermatophilus tzadiensis sp. nov., a UV radiation-resistant bacterium isolated from sand of the Saharan desert Syst Appl Microbiol 36 (3) :177-182.

http://www.ncbi.nlm.nih.gov/pubmed/23415483
2013 Meier-Kolthoff,J.P., Auch,A.F., Klenk,H.-P., Göker,M. ( 2013 ) Genome sequence-based species delimitation with confidence intervals and improved distance functions BMC Bioinformatics 14 (1) :60.

http://www.ncbi.nlm.nih.gov/pubmed/23432962
2013 Makonde,H.M., Boga,H.I., Osiemo,Z., Mwirichia,R., Stielow,J.B., Göker,M., Klenk,H.-P. ( 2013 ) Diversity of termitomyces associated with fungus-farming termites assessed by cultural and culture-independent methods. PLoS One 8 (2) :e56464.

http://www.ncbi.nlm.nih.gov/pubmed/23437139
2013 Carro,L., Pukall,R., Spröer,C., Kroppenstedt,R.M., Trujillo,M.E. ( 2013 ) Micromonospora halotolerans sp. nov., isolated from the rhizosphere of a Pisum sativum plant Antonie Van Leeuwenhoek. 103 (6) :1245-1254.

http://www.ncbi.nlm.nih.gov/pubmed/23494330
2013 Liu,Z., Muller,J., Li,T., Alvey,R.M., Vogl,K., Frigaard,N.U., Rockwell,N.C., Boyd,E.S., Tomsho,L.P., Schuster,S.C., Henke,P., Rohde,M., Overmann,J., Bryant,D.A. ( 2013 ) Genomic analysis reveals key aspects of prokaryotic symbiosis in the phototrophic consortium "Chlorochromatium aggregatum" Genome Biol 14 (11) :R127.

2013 Freese,H.M., Dalingault,H., Petersen,J., Pradella,S., Davenport,K., Teshima,H., Chen,A., Pati,A., Ivanova,N., Goodwin,L.A., Chain,P., Detter,J.C., Rohde,M., Gronow,S., Kyrpides,N.C., Woyke,T., Brinkhoff,T., Göker,M., Overmann,J., Klenk,H.P. ( 2013 ) Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566(T.) Stand Genomic Sci 8 (3) :450-64.

2013 Lefevre,C.T., Trubitsyn,D., Abreu,F., Kolinko,S., Jogler,C., deAlmeida,L.G., deVasconcelos,A.T., Kube,M., Reinhardt,R., Lins,U., Pignol,D., Schuler,D., Bazylinski,D.A., Ginet,N. ( 2013 ) Comparative genomic analysis of magnetotactic bacteria from the Deltaproteobacteria provides new insights into magnetite and greigite magnetosome genes required for magnetotaxis Environ Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23607663