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Publications of the DSMZ

Here you will find a complete list of all scientific publications.

Publications
2013 Spring,S., Riedel,T., Spröer,C., Yan,S., Harder,J., Fuchs,B.M. ( 2013 ) Taxonomy and evolution of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria: description of Luminiphilus syltensis gen. nov., sp. nov., reclassification of Haliea rubra as Pseudohaliea rubra gen. nov., comb. nov., and emendation of Chromatocurvus halotolerans BMC Microbiol 13 :118.

http://www.ncbi.nlm.nih.gov/pubmed/23705883
2013 Spring,S., Riedel,T. ( 2013 ) Mixotrophic growth of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria is carbon-starvation independent and correlates with the type of carbon source and oxygen availability BMC Microbiol 13 :117.

http://www.ncbi.nlm.nih.gov/pubmed/23705861
2013 Montero-Calasanz,M.D., Göker,M., Pötter,G., Rohde,M., Spröer,C., Schumann,P., Gorbushina,A.A., Klenk,H.P. ( 2013 ) Geodermatophilus africanus sp. nov., a halotolerant actinomycete isolated from Saharan desert sand Antonie Van Leeuwenhoek

http://www.ncbi.nlm.nih.gov/pubmed/23723018
2013 Meier-Kolthoff,J.P., Göker,M., Spröer,C., Klenk,H.P. ( 2013 ) When should a DDH experiment be mandatory in microbial taxonomy? Arch Microbiol 195 (6) :413-8.

http://www.ncbi.nlm.nih.gov/pubmed/23591456
2013 Meklat,A., Bouras,N., Zitouni,A., Mathieu,F., Lebrihi,A., Schumann,P., Spröer,C., Klenk,H.P., Sabaou,N. ( 2013 ) Actinopolyspora righensis sp. nov., a novel halophilic actinomycete isolated from Saharan soil in Algeria Antonie Van Leeuwenhoek

http://www.ncbi.nlm.nih.gov/pubmed/23754661
2013 Li,H.W., Zhi,X.Y., Yao,J.C., Zhou,Y., Tang,S.K., Klenk,H.P., Zhao,J., Li,W.J. ( 2013 ) Comparative genomic analysis of the genus Nocardiopsis provides new insights into its genetic mechanisms of environmental adaptability PLoS One 8 (4) :e61528.

http://www.ncbi.nlm.nih.gov/pubmed/23626695
2013 Hernandez-Sanchez,V., Lang,E., Wittich,R.M. ( 2013 ) The Three-Species Consortium of Genetically Improved Strains Cupriavidus necator RW112, Burkholderia xenovorans RW118, and Pseudomonas pseudoalcaligenes RW120 Grows with Technical Polychlorobiphenyl, Aroclor 1242 Front Microbiol 4 :90.

http://www.ncbi.nlm.nih.gov/pubmed/23658554
2013 Cheng,J., Chen,W., Huo-Zhang,B., Nimaichand,S., Zhou,E.M., Lu,X.H., Klenk,H.P., Li,W.J. ( 2013 ) Microlunatus cavernae sp. nov., a novel actinobacterium isolated from Alu ancient cave, Yunnan, south-west China Antonie Van Leeuwenhoek 104 (1) :95-101.

http://www.ncbi.nlm.nih.gov/pubmed/23653120
2013 Smith,S., Fritze,D., Stackebrandt,E. ( 2013 ) Public Service Collections and Biological Resource Centers of Microorganisms The Prokaryotes :267-304.

2013 Göker,M., Klenk,H.-P. ( 2013 ) Phylogeny-driven target selection for genome-sequencing (and other) projects Stand Genomic Sci 8 :360-374.

2013 Stackebrandt,E., Chertkov,O., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.-F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Pan,C., Rohde,M., Gronow,S., Göker,M., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Woyke,T., Kyrpides,N.C., Klenk,H.-P. ( 2013 ) Complete genome sequence of the free-living aerobic spirochete Turneriella parva type strain (HT) Stand Genomic Sci 8 :228-238.

2013 Huntemann,M., Stackebrandt,E., Held,B., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Rohde,M., Gronow,S., Göker,M., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Woyke,T., Hugenholtz,P., Kyrpides,N.C., Klenk,H.-P., Lapidus,A. ( 2013 ) Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055T) Stand Genomic Sci 8 :177-187.

2013 Liolios,K., Abt,B., Scheuner,C., Teshima,H., Held,B., Lapidus,A., Nolan,M., Lucas,S., Deshpande,S., Cheng,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Rohde,M., Tindall,B.J., Detter,J.C., Göker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Woyke,T., Klenk,H.-P., Kyrpides,N.C. ( 2013 ) Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692T) from the alkaline Lake Magadi in the East African Rift. Stand Genomic Sci 7 :165-176.

2013 Abt,B., Göker,M., Scheuner,C., Han,C., Lu,M., Misra,M., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Chang,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Jeffries,C.D., Rohde,M., Spring,S., Gronow,S., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Woyke,T., Klenk,H.-P. ( 2013 ) Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema. Stand Genomic Sci 8 :88-105.

2013 Visser,M., Worm,P., Muyzer,G., Pereira,I.A.C., Schaap,P.J., Plugge,C.M., Kuever,J., Parshina,S.N., Nazina,T.N., Ivanova,A.E., Bernier-Latmani,R., Goodwin,L.A., Kyrpides,N.C., Woyke,T., Chain,P., Davenport,K.W., Spring,S., Klenk,H.-P., Stams,A. ( 2013 ) Genome analysis of Desulfotomaculum kuznetsovii strain 17T reveals a physiological similarity with Pelotomaculum thermopropionicum SIT Stand Genomic Sci 8 :69-87.

2013 Mavromatis,K., Stackebrandt,E., Held,B., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.-F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Rohde,M., Spring,S., Göker,M., Woyke,T., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.-P., Kyrpides,N. ( 2013 ) Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGAT). Stand Genomic Sci 8 :47-57.

2013 Stackebrandt,E., Chertkov,O., Lapidus,A., Nolan,M., Lucas,S., Han,C., Cheng,J.F., Tapia,R., Goodwin,L.A., Bruce,D., Pitluck,S., Liolios,K., Mavromatis,K., Pagani,I., Ivanova,N., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Rohde,M., Tindall,B.J., Göker,M., Woyke,T., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.-P., Kyrpides,N. ( 2013 ) High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5T) Stand Genomic Sci 8 :37-46.

2013 Vaas,L.A., Sikorski,J., Hofner,B., Fiebig,A., Buddruhs,N., Klenk,H.P., Göker,M. ( 2013 ) opm: an R package for analysing OmniLog(R) phenotype microarray data Bioinformatics

http://www.ncbi.nlm.nih.gov/pubmed/23740744
2013 Mavromatis,K., Stackebrandt,E., Munk,C., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.-F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Rohde,M., Gronow,S., Göker,M., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.-P., Woyke,T. ( 2013 ) Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437T) Stand Genomic Sci 8 :26-36.

2013 Foesel,B.U., Nagele,V., Naether,A., Wust,P.K., Weinert,J., Bonkowski,M., Lohaus,G., Polle,A., Alt,F., Oelmann,Y., Fischer,M., Friedrich,M.W., Overmann,J. ( 2013 ) Determinants of Acidobacteria activity inferred from the relative abundances of 16S rRNA transcripts in German grassland and forest soils Environ Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23802854
2013 Stackebrandt,E., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.-F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Chang,Y.-J., Land,M., Hauser,L., Rohde,M., Pukall,R., Göker,M., Detter,J.C., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.-P. ( 2013 ) Complete genome sequence of Coriobacterium glomerans type strain (PW2T) from the midgut of Pyrrhocoris apterus L. (red soldier bug) Stand Genomic Sci 8 :15-25.

2013 Freese,H.M., Martin-Creuzburg,D. ( 2013 ) Food quality of mixed bacteria-algae diets for Daphnia magna Hydrobiologia

2013 Liolios,K., Abt,B., Scheuner,C., Teshima,H., Held,B., Lapidus,A., Nolan,M., Lucas,S., Deshpande,S., Cheng,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Rohde,M., Tindall,B.J., Detter,J.C., Göker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Woyke,T., Klenk,H.-P., Kyrpides,N.C. ( 2013 ) Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692T) from the alkaline Lake Magadi in the East African Rift. Stand Genomic Sci 7 :165-176.

2013 Abt,B., Göker,M., Scheuner,C., Han,C., Lu,M., Misra,M., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Chang,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Jeffries,C.D., Rohde,M., Spring,S., Gronow,S., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Woyke,T., Klenk,H.-P. ( 2013 ) Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema. Stand Genomic Sci 8 :88-105.

2013 Foesel,B.U., Rohde,M., Overmann,J. ( 2013 ) Blastocatella fastidiosa gen. nov., sp. nov., isolated from semiarid savanna soil - the first described species of Acidobacteria subdivision 4 Syst Appl Microbiol 36 (2) :82-89.

http://www.ncbi.nlm.nih.gov/pubmed/23266188
2013 Freese,H.M., Martin-Creuzburg,D. ( 2013 ) Food quality of mixed bacteria-algae diets for Daphnia magna Hydrobiologia

2013 Losey,N.A., Stevenson,B.S., Verbarg,S., Rudd,S., Moore,E.R., Lawson,P.A. ( 2013 ) Fontimonas thermophila gen. nov., sp. nov., a moderately thermophilic bacterium isolated from a freshwater hot spring, and proposal of Solimonadaceae fam. nov. to replace Sinobacteraceae Zhou et al. 2008 Int J Syst Evol Microbiol 63 (Pt 1) :254-9.

http://www.ncbi.nlm.nih.gov/pubmed/22407788
2013 Lal,D., Khan,F., Gupta,S.K., Schumann,P., Lal,R. ( 2013 ) Edaphobacillus lindanitolerans gen. nov., sp. nov., isolated from hexachlorocyclohexane (HCH) contaminated soil. J Basic Microbiol :1-8.

http://www.ncbi.nlm.nih.gov/pubmed/23322487
2013 Bandyopadhyay,S., Schumann,P., Das,S.K. ( 2013 ) Pannonibacter indica sp. nov., a highly arsenate-tolerant bacterium isolated from a hot spring in India. Arch Microbiol 195 (1) :1-8.

http://www.ncbi.nlm.nih.gov/pubmed/22940883
2013 Fiebig,A., Pradella,S., Petersen,J., Michael,V., Päuker,O., Rohde,M., Göker,M., Klenk,H.-P., Wagner-Döbler,I. ( 2013 ) Genome of the marine alphaproteobacterium Hoeflea phototrophica type strain (DFL-43T) Stand Genomic Sci 7 :440-448.

2013 Fiebig,A., Pradella,S., Petersen,J., Päuker,O., Michael,V., Lünsdorf,H., Göker,M., Klenk,H.-P., Wagner-Döbler,I. ( 2013 ) Genome of the R-body producing marine alphaproteobacterium Labrenzia alexandrii type strain (DFL-11T) Stand Genomic Sci 7 :413-426.

2013 Zhu,W.Y., Zhang,J.L., Qin,Y.L., Xiong,Z.J., Zhang,D.F., Klenk,H.P., Zhao,L.X., Xu,L.H., Li,W.J. ( 2013 ) Blastococcus endophyticus sp. nov., a novel actinobacterium isolated from Camptotheca acuminata Decne Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23475341
2013 Tortoli,E., Gitti,Z., Klenk,H.P., Lauria,S., Mannino,R., Mantegani,P., Mariottini,A., Neonakis,I. ( 2013 ) Survey of 150 strains belonging to the Mycobacterium terrae complex and description of Mycobacterium engbaekii sp. nov., Mycobacterium heraklionense sp. nov. and Mycobacterium longobardum sp. nov Int J Syst Evol Microbiol 63 (Pt 2) :401-11.

http://www.ncbi.nlm.nih.gov/pubmed/22447702
2013 Schumann,P., Pukall,R., Sproer,C., Stackebrandt,E. ( 2013 ) Reclassification of Koreibacter algae as a later heterotypic synonym of Paraoerskovia marina and emended descriptions of the genus Paraoerskovia Khan et al. 2009 and of Paraoerskovia marina Khan et al. 2009 Int J Syst Evol Microbiol 63 (Pt 1) :219-23.

http://www.ncbi.nlm.nih.gov/pubmed/22389283
2013 Hanafy,M.S., El-Banna,A., Schumacher,H.M., Jacobsen,H.J., Hassan,F.S. ( 2013 ) Enhanced tolerance to drought and salt stresses in transgenic faba bean (Vicia faba L.) plants by heterologous expression of the PR10a gene from potato Plant Cell Rep 32 (5) :663-74.

http://www.ncbi.nlm.nih.gov/pubmed/23455709
2013 Montero-Calasanz,M.D., Goker,M., Potter,G., Rohde,M., Sproer,C., Schumann,P., Gorbushina,A.A., Klenk,H.P. ( 2013 ) Geodermatophilus normandii sp. nov., isolated from Saharan desert sand Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23543496
2013 Mohammadipanah,F., Hamedi,J., Goker,M., Fiebig,A., Pukall,R., Sproer,C., Klenk,H.P. ( 2013 ) Kribbella shirazensis sp. nov., isolated from soil of Shiraz in Iran Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23524355
2013 Lang,E., Schumann,P., Adler,S., Sproer,C., Sahin,N. ( 2013 ) Azorhizobium oxalatiphilum sp. nov., and emended description of the genus Azorhizobium Int J Syst Evol Microbiol 63 (Pt 4) :1505-1511.

http://www.ncbi.nlm.nih.gov/pubmed/22888185
2013 Gaboyer,F., Tindall,B.J., Ciobanu,M.C., Duthoit,F., LeRomancer,M., Alain,K. ( 2013 ) Phaeobacter leonis sp. nov., a novel alphaproteobacterium from Mediterranean Sea sediments Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23475346
2013 Ezeoke,I., Klenk,H.P., Pötter,G., Schumann,P., Moser,B.D., Lasker,B.A., Nicholson,A., Brown,J.M. ( 2013 ) Nocardia amikacinitolerans sp. nov., an amikacin-resistant human pathogen Int J Syst Evol Microbiol 63 (Pt 3) :1056-1061.

http://www.ncbi.nlm.nih.gov/pubmed/22707533
2013 Konstantinidis,K., Stackebrandt,E. ( 2013 ) Defining taxonomic ranks. The Prokaryotes :267-304.

2013 Yarza,P., Sproer,C., Swiderski,J., Mrotzek,N., Spring,S., Tindall,B.J., Gronow,S., Pukall,R., Klenk,H.P., Lang,E., Verbarg,S., Crouch,A., Lilburn,T., Beck,B., Unosson,C., Cardew,S., Moore,E.R., Gomila,M., Nakagawa,Y., Janssens,D., DeVos,P., Peiren,J., Suttels,T., Clermont,D., Bizet,C., Sakamoto,M., Iida,T., Kudo,T., Kosako,Y., Oshida,Y., Ohkuma,M., D,R.A., Spieck,E., PommereningRoeser,A., Figge,M., Park,D., Buchanan,P., Cifuentes,A., Munoz,R., Euzeby,J.P., Schleifer,K.H., Ludwig,W., Amann,R., Glockner,F.O., Rossello-Mora,R. ( 2013 ) Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names Syst Appl Microbiol 36 (1) :69-73.

http://www.ncbi.nlm.nih.gov/pubmed/23410935
2013 Verma,P., Seong,C.N., Pandey,P.K., Bhonde,R.R., Sproer,C., Rohde,M., Shouche,Y.S. ( 2013 ) Bhargavaea indica sp. nov., a member of the phylum Firmicutes, isolated from Arabian Sea sediment J Microbiol 51 (1) :36-42.

http://www.ncbi.nlm.nih.gov/pubmed/23456710
2013 Riedel,T., Gomez-Consarnau,L., Tomasch,J., Martin,M., Jarek,M., Gonzalez,J.M., Spring,S., Rohlfs,M., Brinkhoff,T., Cypionka,H., Goker,M., Fiebig,A., Klein,J., Goesmann,A., Fuhrman,J.A., Wagner-Dobler,I. ( 2013 ) Genomics and physiology of a marine flavobacterium encoding a proteorhodopsin and a xanthorhodopsin-like protein PLoS One 8 (3) :e57487.

http://www.ncbi.nlm.nih.gov/pubmed/23526944
2013 Meklat,A., Bouras,N., Zitouni,A., Mathieu,F., Lebrihi,A., Schumann,P., Sproer,C., Klenk,H.P., Sabaou,N. ( 2013 ) Actinopolyspora saharensis sp. nov., a novel halophilic actinomycete isolated from a Saharan soil of Algeria Antonie Van Leeuwenhoek 103 (4) :771-776.

http://www.ncbi.nlm.nih.gov/pubmed/23196893
2013 Petersen,J., Frank,O., Göker,M., Pradella,S. ( 2013 ) Extrachromosomal, extraordinary and essential-the plasmids of the Roseobacter clade. Appl Microbiol Biotechnol. 97 (7) :2805-2815.

http://www.ncbi.nlm.nih.gov/pubmed/23435940
2013 Montero-Calasanz,M.C., Göker,M., Rohde,M., Schumann,P., Pötter,G., Spröer,C., Gorbushina,A.A., Klenk,H.-P. ( 2013 ) Geodermatophilus siccatus sp. nov., isolated from arid sand of the Saharan desert in Chad. Antonie Van Leeuwenhoek 103 (3) :449-456.

http://www.ncbi.nlm.nih.gov/pubmed/23076796
2013 Montero-Calasanz,M.C., Göker,M., Pötter,G., Rohde,M., Spröer,C., Schumann,P., Gorbushina,A.A., Klenk,H.P. ( 2013 ) Geodermatophilus saharensis sp. nov., isolated from sand of the Saharan desert in Chad Arch Microbiol 195 (3) :153-159.

http://www.ncbi.nlm.nih.gov/pubmed/23269498
2013 Montero-Calasanz,M.C., Göker,M., Broughton,W.J., Cattaneo,A., Favet,J., Pötter,G., Rohde,M., Spröer,C., Schumann,P., Klenk,H.-P., Gorbushina,A.A. ( 2013 ) Geodermatophilus tzadiensis sp. nov., a UV radiation-resistant bacterium isolated from sand of the Saharan desert Syst Appl Microbiol 36 (3) :177-182.

http://www.ncbi.nlm.nih.gov/pubmed/23415483
2013 Meier-Kolthoff,J.P., Auch,A.F., Klenk,H.-P., Göker,M. ( 2013 ) Genome sequence-based species delimitation with confidence intervals and improved distance functions BMC Bioinformatics 14 (1) :60.

http://www.ncbi.nlm.nih.gov/pubmed/23432962
2013 Makonde,H.M., Boga,H.I., Osiemo,Z., Mwirichia,R., Stielow,J.B., Göker,M., Klenk,H.-P. ( 2013 ) Diversity of termitomyces associated with fungus-farming termites assessed by cultural and culture-independent methods. PLoS One 8 (2) :e56464.

http://www.ncbi.nlm.nih.gov/pubmed/23437139
2013 Carro,L., Pukall,R., Spröer,C., Kroppenstedt,R.M., Trujillo,M.E. ( 2013 ) Micromonospora halotolerans sp. nov., isolated from the rhizosphere of a Pisum sativum plant Antonie Van Leeuwenhoek. 103 (6) :1245-1254.

http://www.ncbi.nlm.nih.gov/pubmed/23494330
2012 Naether,A., Foesel,B.U., Naegele,V., Wüst,P.K., Weinert,J., Bonkowski,M., Alt,F., Oelmann,Y., Polle,A., Lohaus,G., Gockel,S., Hemp,A., Kalko,E.K., Linsenmair,K.E., Pfeiffer,S., Renner,S., Schöning,I., Weisser,W.W., Wells,K., Fischer,M., Overmann,J., Friedrich,M.W. ( 2012 ) Environmental Factors Affect Acidobacterial Communities below the Subgroup Level in Grassland and Forest Soils Appl Environ Microbiol 78 (20) :7398-7406.

http://www.ncbi.nlm.nih.gov/pubmed/22885760
2012 Gich,F., Janys,M.A., König,M., Overmann,J. ( 2012 ) Enrichment of previously uncultured bacteria from natural complex communities by adhesion to solid surfaces Environ Microbiol 14 (11) :2984-2997.

http://www.ncbi.nlm.nih.gov/pubmed/22970793
2012 Söhngen,C., Bunk,B., Overmann,J. ( 2012 ) Innovative Datenmobilisierung am deutschen GBIF Knoten Bakterien und Archaeen - Grundlage für Biodiversitätsanalysen der nächsten Generation GfBS news 26 :8-12.

2012 Birkhofer,K., Schöning,I., Alt,F., Herold,N., Klarner,B., Maraun,M., Marhan,S., Oelmann,Y., Wubet,T., Yurkov,A., Begerow,D., Berner,D., Buscot,F., Daniel,R., Diekötter,T., Ehnes,R.B., Erdmann,G., Fischer,C., Foesel,B., Groh,J., Gutknecht,J., Kandeler,E., Lang,C., Lohaus,G., Meyer,A., Nacke,H., Nather,A., Overmann,J., Polle,A., Pollierer,M.M., Scheu,S., Schloter,M., Schulze,E.D., Schulze,W., Weinert,J., Weisser,W.W., Wolters,V., Schrumpf,M. ( 2012 ) General Relationships between Abiotic Soil Properties and Soil Biota across Spatial Scales and Different Land-Use Types PLoS ONE 7 (8) :e43292.

http://www.ncbi.nlm.nih.gov/pubmed/22937029
2012 Selezska,K., Kazmierczak,M., Musken,M., Garbe,J., Schobert,M., Haussler,S., Wiehlmann,L., Rohde,C., Sikorski,J. ( 2012 ) Pseudomonas aeruginosa population structure revisited under environmental focus: impact of water quality and phage pressure Environ Microbiol 14 (8) :1952-1967.

http://www.ncbi.nlm.nih.gov/pubmed/22390474
2012 Liu,Z., Frigaard,N.U., Vogl,K., Iino,T., Ohkuma,M., Overmann,J., Bryant,D.A. ( 2012 ) Complete genome of Ignavibacterium album, a metabolically versatile, flagellated, facultative anaerobe from the phylum Chlorobi Front Microbiol 3 :185.

http://www.ncbi.nlm.nih.gov/pubmed/22661972
2012 Pester,M., Rattei,T., Flechl,S., Gröngröft,A., Richter,A., Overmann,J., Reinhold-Hurek,B., Loy,A., Wagner,M. ( 2012 ) amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions Environ Microbiol 14 (2) :525-539.

http://www.ncbi.nlm.nih.gov/pubmed/22141924
2012 Rücker,O., Köhler,A., Behammer,B., Sichau,K., Overmann,J. ( 2012 ) Puf operon sequences and inferred structures of light-harvesting complexes of three closely related Chromatiaceae exhibiting different absorption characteristics Arch Microbiol 194 (2) :123-134.

http://www.ncbi.nlm.nih.gov/pubmed/21805371
2012 Götz,M., Popovski,S., Kollenberg,M., Gorovits,R., Brown,J.K., Cicero,J.M., Czosnek,H., Winter,S., Ghanim,M. ( 2012 ) Implication of Bemisia tabaci heat shock protein 70 in Begomovirus-whitefly interactions J Virol 86 (24) :13241-52.

http://www.ncbi.nlm.nih.gov/pubmed/23015709
2012 Hamed,K., Menzel,W., Mohamed,M.E., Dafallah,G., Gadelseed,A.M.A., Winter,S. ( 2012 ) First Report of Shallot virus X in Onion in Sudan Plant Disease 96 (7) :1075-1075.

http://dx.doi.org/10.1094/PDIS-03-12-0253-PDN
2012 Ochwo-Ssemakula,M., Hakiza,J.J., Adipala,E., Edema,R., Redinbaugh,M.G., Aritua,V., Winter,S. ( 2012 ) Characterization and distribution of a Potyvirus associated with passion fruit woodiness disease in Uganda Plant Dis. 96 :659-665.

2012 Martelli,G.P., AbouGhanem-Sabanadzovic,N., Agranovsky,A.A., AlRwahnih,M., Dolja,V.V., Dovas,C.I., Fuchs,M., Gugerli,P., Hu,J.S., Jelkmann,W., Katis,N.I., Maliogka,V.I., Melzer,M.J., Menzel,W., Minafra,A., Rott,M.E., Rowhani,A., Sabanadzovic,S., Saldarelli,P. ( 2012 ) Taxonomic revision of the family Closteroviridae with special reference to the grapevine leafroll-associated members of the genus Ampleovirus and the putative species unassigned to the family Journal of Plant Pathology 94 :7-19.

http://dx.doi.org/10.4454/jpp.fa.2012.022
2012 Menzel,W., Hamacher,J., Weissbrodt,S., Winter,S. ( 2012 ) Complete Nucleotide Sequence of the RNA 3 of Bacopa chlorosis virus and Production of Polyclonal Antibodies to a Recombinant Coat Protein Journal of Phytopathology 160 (3) :163-165.

http://dx.doi.org/10.1111/j.1439-0434.2011.01877.x
2012 Stielow,J.B., Bratek,Z., Klenk,H.P., Winter,S., Menzel,W. ( 2012 ) A novel mitovirus from the hypogeous ectomycorrhizal fungus Tuber excavatum Arch Virol. 157 :787-790.

http://www.ncbi.nlm.nih.gov/pubmed/22286751
2012 Abraham,A., Menzel,W., Vetten,H.J., Winter,S. ( 2012 ) Analysis of the tomato mild mottle virus genome indicates that it is the most divergent member of the genus Ipomovirus (family Potyviridae) Arch Virol. 157 (2) :353-357.

http://www.ncbi.nlm.nih.gov/pubmed/22080188
2012 Jelkmann,W., Mikona,C., Turturo,C., Navarro,B., Rott,M.E., Menzel,W., Saldarelli,P., Minafra,A., Martelli,G.P. ( 2012 ) Molecular characterization and taxonomy of grapevine leafroll-associated virus 7 Arch Virol. 157 (2) :359-362.

http://www.ncbi.nlm.nih.gov/pubmed/22109709
2012 Menzel,W., Winter,S. ( 2012 ) Sequencing of the Tamus red mosaic virus genome: further evidence that it is a distinct species of the genus Potexvirus Virus Genes 44 (1) :120-123.

http://www.ncbi.nlm.nih.gov/pubmed/21881939
2012 Margesin,R., Sproer,C., Zhang,D.C., Busse,H.J. ( 2012 ) Polaromonas glacialis sp. nov. and Polaromonas cryoconiti sp. nov., isolated from alpine glacier cryoconite Int J Syst Evol Microbiol 62 (Pt 11) :2662-2668.

http://www.ncbi.nlm.nih.gov/pubmed/22199222
2012 Vaishampayan,P., Moissl-Eichinger,C., Pukall,R., Schumann,P., Sproer,C., Augustus,A., HaydenRoberts,A., Namba,G., Cisneros,J., Salmassi,T., Venkateswaran,K. ( 2012 ) Description of Tersicoccus phoenicis gen. nov., sp. nov. isolated from spacecraft assembly clean room environments Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23223813
2012 Raj,P.S., Sasikala,C., Ramaprasad,E.V., Subhash,Y., Busse,H.J., Schumann,P., Ramana,C.V. ( 2012 ) Chryseomicrobium amylolyticum sp. nov., isolated from a semi-arid tropical soil and emended descriptions of the genus Chryseomicrobium and Chyseomicrobium imtechense Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23264507
2012 Montero-Calasanz,M.D., Goker,M., Potter,G., Rohde,M., Sproer,C., Schumann,P., Klenk,H.P., Gorbushina,A.A. ( 2012 ) Geodermatophilus telluris sp. nov., a novel actinomycete isolated from Saharan desert sand in Chad Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23159748
2012 Almeida,B., Vaz-Moreira,I., Schumann,P., Nunes,O.C., Carvalho,G., BarretoCrespo,M.T. ( 2012 ) Patulibacter medicamentivorans sp. nov., isolated from activated sludge of a wastewater treatment plant Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23264500
2012 Richter,J., Schlesner,M., Hoffmann,S., Kreuz,M., Leich,E., Burkhardt,B., Rosolowski,M., Ammerpohl,O., Wagener,R., Bernhart,S.H., Lenze,D., Szczepanowski,M., Paulsen,M., Lipinski,S., Russell,R.B., Adam-Klages,S., Apic,G., Claviez,A., Hasenclever,D., Hovestadt,V., Hornig,N., Korbel,J.O., Kube,D., Langenberger,D., Lawerenz,C., Lisfeld,J., Meyer,K., Picelli,S., Pischimarov,J., Radlwimmer,B., Rausch,T., Rohde,M., Schilhabel,M., Scholtysik,R., Spang,R., Trautmann,H., Zenz,T., Borkhardt,A., Drexler,H.G., Moller,P., MacLeod,R.A.F., Pott,C., Schreiber,S., Trumper,L., Loeffler,M., Stadler,P.F., Lichter,P., Eils,R., Kuppers,R., Hummel,M., Klapper,W., Rosenstiel,P., Rosenwald,A., Brors,B., Siebert,R., Project,t.I.M.-S. ( 2012 ) Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing Nat Genet 44 (12) :1316-1320.

http://www.ncbi.nlm.nih.gov/pubmed/23143595
2012 Yan,L., Ping,N., Zhu,M., Sun,A., Xue,Y., Ruan,C., Drexler,H.G., MacLeod,R.A.F., Wu,D., Chen,S. ( 2012 ) Clinical, immunophenotypic, cytogenetic, and molecular genetic features in 117 adult patients with mixed-phenotype acute leukemia defined by WHO-2008 classification Haematologica 97 (11) :1708-12.

http://www.ncbi.nlm.nih.gov/pubmed/22581002
2012 Uphoff,C.C., Denkmann,S.A., Drexler,H.G. ( 2012 ) Treatment of Mycoplasma contamination in cell cultures with plasmocin J Biomed Biotechnol 2012 :267678.

http://www.ncbi.nlm.nih.gov/pubmed/23091342
2012 Nagel,S., Ehrentraut,S., Tomasch,J., Lienenklaus,S., Schneider,B., Geffers,R., Meyer,C., Kaufmann,M., Drexler,H.G., MacLeod,R.A.F. ( 2012 ) Transcriptional activation of prostate specific homeobox gene NKX3-1 in subsets of T-cell lymphoblastic leukemia (T-ALL) PLoS One 7 (7) :e40747.

http://www.ncbi.nlm.nih.gov/pubmed/22848398
2012 KalenderAtak,Z., DeKeersmaecker,K., Gianfelici,V., Geerdens,E., Vandepoel,R., Pauwels,D., Porcu,M., Lahortiga,I., Brys,V., Dirks,W.G., Quentmeier,H., Cloos,J., Cuppens,H., Uyttebroeck,A., Vandenberghe,P., Cools,J., Aerts,S. ( 2012 ) High accuracy mutation detection in leukemia on a selected panel of cancer genes PLoS One 7 (6) :e38463.

http://www.ncbi.nlm.nih.gov/pubmed/22675565
2012 Steube,K.G., Koelz,A.L., Uphoff,C.C., Drexler,H.G., Kluess,J., Steinberg,P. ( 2012 ) The necessity of identity assessment of animal intestinal cell lines: A case report Cytotechnology 64 :373-378.

http://www.ncbi.nlm.nih.gov/pubmed/22193509
2012 Tiacci,E., Pucciarini,A., Bigerna,B., Pettirossi,V., Strozzini,F., Martelli,M.P., Tabarrini,A., Drexler,H.G., Falini,B. ( 2012 ) Absence of BRAF-V600E in the human cell lines BONNA-12, ESKOL, HAIR-M, and HC-1 questions their origin from hairy cell leukemia Blood 119 (22) :5332-5333.

http://www.ncbi.nlm.nih.gov/pubmed/22653958
2012 Nagel,S., Schneider,B., Meyer,C., Kaufmann,M., Drexler,H.G., MacLeod,R.A.F. ( 2012 ) Transcriptional deregulation of homeobox gene ZHX2 in Hodgkin lymphoma Leuk.Res 36 (5) :646-655.

http://www.ncbi.nlm.nih.gov/pubmed/22078940
2012 Tiacci,E., Spanhol-Rosseto,A., Martelli,M.P., Pasqualucci,L., Quentmeier,H., Grossmann,V., Drexler,H.G., Falini,B. ( 2012 ) The NPM1 wild-type OCI-AML2 and the NPM1-mutated OCI-AML3 cell lines carry DNMT3A mutations Leukemia 26 (3) :554-557.

http://www.ncbi.nlm.nih.gov/pubmed/21904384
2012 Quentmeier,H., Eberth,S., Romani,J., Weich,H.A., Zaborski,M., Drexler,H.G. ( 2012 ) DNA methylation regulates expression of Vascular Endothelial Growth Factor Receptor 2 (KDR) and Vascular Endothelial Growth Factor Receptor 3 (FLT4) BMC Cancer 12 (1) :19.

http://www.ncbi.nlm.nih.gov/pubmed/22251800
2012 Ammerpohl,O., Haake,A., Pellissery,S., Giefing,M., Richter,J., Balint,B., Kulis,M., Le,J., Bibikova,M., Drexler,H.G., Seifert,M., Shaknovic,R., Korn,B., Kuppers,R., Martin-Subero,J.I., Siebert,R. ( 2012 ) Array-based DNA methylation analysis in classical Hodgkin lymphoma reveals new insights into the mechanisms underlying silencing of B cell-specific genes Leukemia 26 (1) :185-188.

http://www.ncbi.nlm.nih.gov/pubmed/21818115
2012 Schneider,B., Nagel,S., Ehrentraut,S., Kaufmann,M., Meyer,C., Geffers,R., Drexler,H.G., MacLeod,R.A.F. ( 2012 ) Neoplastic MiR-17~92 deregulation at a dna fragility motif (SIDD) Genes Chromosomes Cancer 51 (3) :219-228.

http://www.ncbi.nlm.nih.gov/pubmed/22072491
2012 Naether,A., Foesel,B.U., Naegele,V., Wüst,P.K., Weinert,J., Bonkowski,M., Alt,F., Oelmann,Y., Polle,A., Lohaus,G., Gockel,S., Hemp,A., Kalko,E.K., Linsenmair,K.E., Pfeiffer,S., Renner,S., Schöning,I., Weisser,W.W., Wells,K., Fischer,M., Overmann,J., Friedrich,M.W. ( 2012 ) Environmental Factors Affect Acidobacterial Communities below the Subgroup Level in Grassland and Forest Soils Appl Environ Microbiol 78 (20) :7398-7406.

http://www.ncbi.nlm.nih.gov/pubmed/22885760
2012 Krishnamurthi,S., Spring,S., AnilKumar,P., Mayilraj,S., Klenk,H.P., Suresh,K. ( 2012 ) Desulfotomaculum defluvii sp. nov., a sulfate-reducing bacterium isolated from the subsurface environment of a landfill Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23159750
2012 Setaro,S.D., Garnica,S., Herrera,P.I., Suárez,J.P., Göker,M. ( 2012 ) A clustering optimization strategy to estimate species richness of Sebacinales in the tropical Andes based on molecular sequences from distinct DNA regions Biodivers Conserv 21 (9) :2269-2285.

2012 Zhang,Y.J., Tang,S.K., Shi,R., Klenk,H.P., Chen,C., Yang,L.L., Zhou,Y., Li,W.J. ( 2012 ) Salinisphaera halophila sp. nov., a moderately halophilic bacterium isolated from brine of a salt well Int J Syst Evol Microbiol 62 (Pt 9) :2174-2179.

http://www.ncbi.nlm.nih.gov/pubmed/22058321
2012 Stieglmeier,M., Rettberg,P., Barczyk,S., Bohmeier,M., Pukall,R., Wirth,R., Moissl-Eichinger,C. ( 2012 ) Abundance and diversity of microbial inhabitants in European spacecraft-associated clean rooms Astrobiology 12 (6) :572-585.

http://www.ncbi.nlm.nih.gov/pubmed/22794299
2012 Neupane,S., Finlay,R.D., Alstrom,S., Goodwin,L., Kyrpides,N.C., Lucas,S., Lapidus,A., Bruce,D., Pitluck,S., Peters,L., Ovchinnikova,G., Chertkov,O., Han,J., Han,C., Tapia,R., Detter,J.C., Land,M., Hauser,L., Cheng,J.F., Ivanova,N., Pagani,I., Klenk,H.P., Woyke,T., Hogberg,N. ( 2012 ) Complete genome sequence of Serratia plymuthica strain AS12 Stand.Genomic Sci 6 (2) :165-173.

http://www.ncbi.nlm.nih.gov/pubmed/22768360
2012 Mavromatis,K., Chertkov,O., Lapidus,A., Nolan,M., Lucas,S., Tice,H., DelRio,T.G., Cheng,J.F., Han,C., Tapia,R., Bruce,D., Goodwin,L.A., Pitluck,S., Huntemann,M., Liolios,K., Pagani,I., Ivanova,N., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Brambilla,E.M., Rohde,M., Spring,S., Göker,M., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P., Woyke,T. ( 2012 ) Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1) Stand.Genomic Sci 6 (2) :210-219.

http://www.ncbi.nlm.nih.gov/pubmed/22768364
2012 Klenk,H.P., Lu,M., Lucas,S., Lapidus,A., Copeland,A., Pitluck,S., Goodwin,L.A., Han,C., Tapia,R., Brambilla,E.M., Pötter,G., Land,M., Ivanova,N., Rohde,M., Göker,M., Detter,J.C., Li,W.J., Kyrpides,N.C., Woyke,T. ( 2012 ) Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T) Stand.Genomic Sci 6 (2) :265-275.

http://www.ncbi.nlm.nih.gov/pubmed/22768369
2012 Klenk,H.P., Held,B., Lucas,S., Lapidus,A., Copeland,A., Hammon,N., Pitluck,S., Goodwin,L.A., Han,C., Tapia,R., Brambilla,E.M., Pötter,G., Land,M., Ivanova,N., Rohde,M., Göker,M., Detter,J.C., Kyrpides,N.C., Woyke,T. ( 2012 ) Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128T) Stand.Genomic Sci 6 (2) :220-229.

http://www.ncbi.nlm.nih.gov/pubmed/22768365
2012 Huntemann,M., Teshima,H., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Pan,C., Brambilla,E.M., Rohde,M., Spring,S., Göker,M., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P., Woyke,T. ( 2012 ) Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1T) Stand.Genomic Sci 6 (2) :185-193.

http://www.ncbi.nlm.nih.gov/pubmed/22768362
2012 Hahnke,S., Tindall,B.J., Schumann,P., Sperling,M., Brinkhoff,T., Simon,M. ( 2012 ) Planktotalea frisia gen. nov., sp. nov., isolated from the southern North Sea Int J Syst Evol Microbiol 62 (Pt 7) :1619-1624.

http://www.ncbi.nlm.nih.gov/pubmed/21890723
2012 Göker,M., Saunders,E., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.F., Han,C., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Mavromatis,K., Pagani,I., Ivanova,N., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Chang,Y.J., Jeffries,C.D., Brambilla,E.M., Rohde,M., Spring,S., Detter,J.C., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. ( 2012 ) Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T) Stand.Genomic Sci 6 (2) :230-239.

http://www.ncbi.nlm.nih.gov/pubmed/22768366
2012 Copeland,A., Zhang,X., Misra,M., Lapidus,A., Nolan,M., Lucas,S., Deshpande,S., Cheng,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Pan,C., Jeffries,C.D., Detter,J.C., Brambilla,E.M., Rohde,M., Djao,O.D., Göker,M., Sikorski,J., Tindall,B.J., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P., Mavromatis,K. ( 2012 ) Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T) Stand.Genomic Sci 6 (2) :145-154.

http://www.ncbi.nlm.nih.gov/pubmed/22768358
2012 Copeland,A., Zeytun,A., Yassawong,M., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.F., Han,C., Tapia,R., Goodwin,L.A., Pitluck,S., Mavromatis,K., Liolios,K., Pagani,I., Ivanova,N., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Jeffries,C.D., Brambilla,E.M., Rohde,M., Sikorski,J., Pukall,R., Göker,M., Detter,J.C., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P., Lapidus,A. ( 2012 ) Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRPT) Stand.Genomic Sci 6 (2) :240-250.

http://www.ncbi.nlm.nih.gov/pubmed/22768367