Go to ContentTo Startpage
PublicationsPublikationen

Publications of the DSMZ

Here you will find a complete list of all scientific publications.

Publications
2013 Meklat,A., Bouras,N., Zitouni,A., Mathieu,F., Lebrihi,A., Schumann,P., Sproer,C., Klenk,H.P., Sabaou,N. ( 2013 ) Actinopolyspora mzabensis sp. nov., a novel halophilic actinomycete isolated from a Saharan soil of Algeria Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23667146
2013 Meklat,A., Bouras,N., Zitouni,A., Mathieu,F., Lebrihi,A., Schumann,P., Sproer,C., Klenk,H.P., Sabaou,N. ( 2013 ) Actinopolyspora saharensis sp. nov., a novel halophilic actinomycete isolated from a Saharan soil of Algeria Antonie Van Leeuwenhoek 103 (4) :771-776.

http://www.ncbi.nlm.nih.gov/pubmed/23196893
2013 Meier-Kolthoff,J.P., Göker,M., Spröer,C., Klenk,H.P. ( 2013 ) When should a DDH experiment be mandatory in microbial taxonomy? Arch Microbiol 195 (6) :413-8.

http://www.ncbi.nlm.nih.gov/pubmed/23591456
2013 Meier-Kolthoff,J.P., Auch,A.F., Klenk,H.-P., Göker,M. ( 2013 ) Genome sequence-based species delimitation with confidence intervals and improved distance functions BMC Bioinformatics 14 (1) :60.

http://www.ncbi.nlm.nih.gov/pubmed/23432962
2013 Mavromatis,K., Stackebrandt,E., Munk,C., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.-F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Rohde,M., Gronow,S., Göker,M., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.-P., Woyke,T. ( 2013 ) Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437T) Stand Genomic Sci 8 :26-36.

2013 Mavromatis,K., Stackebrandt,E., Held,B., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.-F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Rohde,M., Spring,S., Göker,M., Woyke,T., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.-P., Kyrpides,N. ( 2013 ) Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGAT). Stand Genomic Sci 8 :47-57.

2013 Makonde,H.M., Boga,H.I., Osiemo,Z., Mwirichia,R., Stielow,J.B., Göker,M., Klenk,H.-P. ( 2013 ) Diversity of termitomyces associated with fungus-farming termites assessed by cultural and culture-independent methods. PLoS One 8 (2) :e56464.

http://www.ncbi.nlm.nih.gov/pubmed/23437139
2013 Liolios,K., Abt,B., Scheuner,C., Teshima,H., Held,B., Lapidus,A., Nolan,M., Lucas,S., Deshpande,S., Cheng,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Rohde,M., Tindall,B.J., Detter,J.C., Göker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Woyke,T., Klenk,H.-P., Kyrpides,N.C. ( 2013 ) Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692T) from the alkaline Lake Magadi in the East African Rift. Stand Genomic Sci 7 :165-176.

2013 Li,H.W., Zhi,X.Y., Yao,J.C., Zhou,Y., Tang,S.K., Klenk,H.P., Zhao,J., Li,W.J. ( 2013 ) Comparative genomic analysis of the genus Nocardiopsis provides new insights into its genetic mechanisms of environmental adaptability PLoS One 8 (4) :e61528.

http://www.ncbi.nlm.nih.gov/pubmed/23626695
2013 Lang,E., Schumann,P., Adler,S., Sproer,C., Sahin,N. ( 2013 ) Azorhizobium oxalatiphilum sp. nov., and emended description of the genus Azorhizobium Int J Syst Evol Microbiol 63 (Pt 4) :1505-1511.

http://www.ncbi.nlm.nih.gov/pubmed/22888185
2013 Konstantinidis,K., Stackebrandt,E. ( 2013 ) Defining taxonomic ranks. The Prokaryotes :267-304.

2013 Huntemann,M., Stackebrandt,E., Held,B., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Rohde,M., Gronow,S., Göker,M., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Woyke,T., Hugenholtz,P., Kyrpides,N.C., Klenk,H.-P., Lapidus,A. ( 2013 ) Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055T) Stand Genomic Sci 8 :177-187.

2013 Hernandez-Sanchez,V., Lang,E., Wittich,R.M. ( 2013 ) The Three-Species Consortium of Genetically Improved Strains Cupriavidus necator RW112, Burkholderia xenovorans RW118, and Pseudomonas pseudoalcaligenes RW120 Grows with Technical Polychlorobiphenyl, Aroclor 1242 Front Microbiol 4 :90.

http://www.ncbi.nlm.nih.gov/pubmed/23658554
2013 Göker,M., Klenk,H.-P. ( 2013 ) Phylogeny-driven target selection for genome-sequencing (and other) projects Stand Genomic Sci 8 :360-374.

2013 Gaboyer,F., Tindall,B.J., Ciobanu,M.C., Duthoit,F., LeRomancer,M., Alain,K. ( 2013 ) Phaeobacter leonis sp. nov., a novel alphaproteobacterium from Mediterranean Sea sediments Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23475346
2013 Fiebig,A., Pradella,S., Petersen,J., Päuker,O., Michael,V., Lünsdorf,H., Göker,M., Klenk,H.-P., Wagner-Döbler,I. ( 2013 ) Genome of the R-body producing marine alphaproteobacterium Labrenzia alexandrii type strain (DFL-11T) Stand Genomic Sci 7 :413-426.

2013 Fiebig,A., Pradella,S., Petersen,J., Michael,V., Päuker,O., Rohde,M., Göker,M., Klenk,H.-P., Wagner-Döbler,I. ( 2013 ) Genome of the marine alphaproteobacterium Hoeflea phototrophica type strain (DFL-43T) Stand Genomic Sci 7 :440-448.

2013 Ezeoke,I., Klenk,H.P., Pötter,G., Schumann,P., Moser,B.D., Lasker,B.A., Nicholson,A., Brown,J.M. ( 2013 ) Nocardia amikacinitolerans sp. nov., an amikacin-resistant human pathogen Int J Syst Evol Microbiol 63 (Pt 3) :1056-1061.

http://www.ncbi.nlm.nih.gov/pubmed/22707533
2013 Cheng,J., Chen,W., Huo-Zhang,B., Nimaichand,S., Zhou,E.M., Lu,X.H., Klenk,H.P., Li,W.J. ( 2013 ) Microlunatus cavernae sp. nov., a novel actinobacterium isolated from Alu ancient cave, Yunnan, south-west China Antonie Van Leeuwenhoek 104 (1) :95-101.

http://www.ncbi.nlm.nih.gov/pubmed/23653120
2013 Carro,L., Pukall,R., Spröer,C., Kroppenstedt,R.M., Trujillo,M.E. ( 2013 ) Micromonospora halotolerans sp. nov., isolated from the rhizosphere of a Pisum sativum plant Antonie Van Leeuwenhoek. 103 (6) :1245-1254.

http://www.ncbi.nlm.nih.gov/pubmed/23494330
2013 Brack,C., Mikolasch,A., Pukall,R., Schumann,P., Köster,M., Schauer,F. ( 2013 ) Bacteriolytic Bacillus species isolated from brackish waters of the Southern Baltic Sea Mar Biol

2013 Abt,B., Göker,M., Scheuner,C., Han,C., Lu,M., Misra,M., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Chang,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Jeffries,C.D., Rohde,M., Spring,S., Gronow,S., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Woyke,T., Klenk,H.-P. ( 2013 ) Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema. Stand Genomic Sci 8 :88-105.

2013 Uphoff,C.C., Drexler,H.G. ( 2013 ) Eradication of Mycoplasma contaminations Methods Mol Biol 946 :15-26.

http://www.ncbi.nlm.nih.gov/pubmed/23179823
2013 Uphoff,C.C., Drexler,H.G. ( 2013 ) Detection of Mycoplasma contaminations Methods Mol Biol 946 :1-13.

http://www.ncbi.nlm.nih.gov/pubmed/23179822
2013 Sedlacek,I., Holochova,P., Maslanova,I., Kosina,M., Sproer,C., Bryndova,H., Vandamme,P., Rudolf,I., Hubalek,Z., Svec,P. ( 2013 ) Enterococcus ureilyticus sp. nov. and Enterococcus rotai sp. nov., two urease-producing enterococci from the environment Int J Syst Evol Microbiol 63 (Pt 2) :502-10.

http://www.ncbi.nlm.nih.gov/pubmed/22523160
2013 Sturzl,M., Gaus,D., Dirks,W.G., Ganem,D., Jochmann,R. ( 2013 ) Kaposi's sarcoma-derived cell line SLK is not of endothelial origin, but is a contaminant from a known renal carcinoma cell line Int J Cancer 132 (8) :1954-1958.

http://www.ncbi.nlm.nih.gov/pubmed/22987579
2013 Rosolowski,M., Lauter,J., Abramov,D., Drexler,H.G., Hummel,M., Klapper,W., Macleod,R.A., Pellissery,S., Horn,F., Siebert,R., Loeffler,M. ( 2013 ) Massive transcriptional perturbation in subgroups of diffuse large B-cell lymphomas PLoS One 8 (11) :e76287.

http://www.ncbi.nlm.nih.gov/pubmed/24223701
2013 Penesyan,A., Breider,S., Schumann,P., Tindall,B.J., Egan,S., Brinkhoff,T. ( 2013 ) Epibacterium ulvae gen. nov., sp. nov., epibiotic bacteria isolated from the surface of a marine alga Int J Syst Evol Microbiol 63 (Pt 5) :1589-96.

http://www.ncbi.nlm.nih.gov/pubmed/22904216
2013 Roesner,L.M., Mielke,C., Fahnrich,S., Merkhoffer,Y., Dittmar,K.E., Drexler,H.G., Dirks,W.G. ( 2013 ) Stable expression of MutLgamma in human cells reveals no specific response to mismatched DNA, but distinct recruitment to damage sites J Cell Biochem 114 (10) :2405-14.

http://www.ncbi.nlm.nih.gov/pubmed/23696135
2013 Quentmeier,H., Amini,R.M., Berglund,M., Dirks,W.G., Ehrentraut,S., Geffers,R., Macleod,R.A., Nagel,S., Romani,J., Scherr,M., Zaborski,M., Drexler,H.G. ( 2013 ) U-2932: two clones in one cell line, a tool for the study of clonal evolution Leukemia 27 (5) :1155-1164.

http://www.ncbi.nlm.nih.gov/pubmed/23295736
2013 Nagel,S., Meyer,C., Quentmeier,H., Kaufmann,M., Drexler,H.G., Macleod,R.A. ( 2013 ) Chromothripsis in Hodgkin lymphoma Genes Chromosomes Cancer 52 (8) :741-7.

http://www.ncbi.nlm.nih.gov/pubmed/23630094
2013 Nagel,S., Ehrentraut,S., Tomasch,J., Quentmeier,H., Meyer,C., Kaufmann,M., Drexler,H.G., Macleod,R.A. ( 2013 ) Ectopic Expression of Homeobox Gene NKX2-1 in Diffuse Large B-Cell Lymphoma Is Mediated by Aberrant Chromatin Modifications PLoS One 8 (4) :e61447.

http://www.ncbi.nlm.nih.gov/pubmed/23637834
2013 Maletzki,C., Schmidt,F., Dirks,W.G., Schmitt,M., Linnebacher,M. ( 2013 ) Frameshift-derived neoantigens constitute immunotherapeutic targets for patients with microsatellite-instable haematological malignancies: Frameshift peptides for treating MSI blood cancers Eur J Cancer

http://www.ncbi.nlm.nih.gov/pubmed/23561850
2013 MacLeod,R.A.F., Nagel,S., Dirks,W., Drexler,H.G. ( 2013 ) BCR-ABL1 expression in multiple myeloma cells: A case of mistaken identity? Proc Natl Acad Sci U S A 110 (4) :E270-E271.

http://www.ncbi.nlm.nih.gov/pubmed/23319659
2013 MacLeod,R.A.F., Drexler,H.G. ( 2013 ) Classical and molecular cytogenetic analysis Methods Mol Biol 946 :39-60.

http://www.ncbi.nlm.nih.gov/pubmed/23179825
2013 Meklat,A., Bouras,N., Zitouni,A., Mathieu,F., Lebrihi,A., Schumann,P., Spröer,C., Klenk,H.P., Sabaou,N. ( 2013 ) Actinopolyspora mzabensis sp. nov., a novel halophilic actinomycete isolated from a Saharan soil of Algeria Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23667146
2013 MacLeod,R.A.F., Dirks,W.G., Drexler,H.G. ( 2013 ) Where have all the cell lines gone? Int J Cancer 132 (5) :1232-1234.

http://www.ncbi.nlm.nih.gov/pubmed/22847338
2013 Kreck,B., Richter,J., Ammerpohl,O., Barann,M., Esser,D., Petersen,B.S., Vater,I., MurgaPenas,E.M., BormannChung,C.A., Seisenberger,S., LeeBoyd,V., Smallwood,S., Drexler,H.G., Macleod,R.A., Hummel,M., Krueger,F., Hasler,R., Schreiber,S., Rosenstiel,P., Franke,A., Siebert,R. ( 2013 ) Base-pair resolution DNA methylome of the EBV-positive Endemic Burkitt lymphoma cell line DAUDI determined by SOLiD bisulfite-sequencing Leukemia 27 (8) :1751-3.

http://www.ncbi.nlm.nih.gov/pubmed/23307032
2013 Holmfeldt,L., Wei,L., Diaz-Flores,E., Walsh,M., Zhang,J., Ding,L., Payne-Turner,D., Churchman,M., Andersson,A., Chen,S.C., McCastlain,K., Becksfort,J., Ma,J., Wu,G., Patel,S.N., Heatley,S.L., Phillips,L.A., Song,G., Easton,J., Parker,M., Chen,X., Rusch,M., Boggs,K., Vadodaria,B., Hedlund,E., Drenberg,C., Baker,S., Pei,D., Cheng,C., Huether,R., Lu,C., Fulton,R.S., Fulton,L.L., Tabib,Y., Dooling,D.J., Ochoa,K., Minden,M., Lewis,I.D., To,L.B., Marlton,P., Roberts,A.W., Raca,G., Stock,W., Neale,G., Drexler,H.G., Dickins,R.A., Ellison,D.W., Shurtleff,S.A., Pui,C.H., Ribeiro,R.C., Devidas,M., Carroll,A.J., Heerema,N.A., Wood,B., Borowitz,M.J., Gastier-Foster,J.M., Raimondi,S.C., Mardis,E.R., Wilson,R.K., Downing,J.R., Hunger,S.P., Loh,M.L., Mullighan,C.G. ( 2013 ) The genomic landscape of hypodiploid acute lymphoblastic leukemia Nat Genet 45 (3) :242-252.

http://www.ncbi.nlm.nih.gov/pubmed/23334668
2013 Ehrentraut,S., Nagel,S., Scherr,M.E., Schneider,B., Quentmeier,H., Geffers,R., Kaufmann,M., Meyer,C., Prochorec-Sobieszek,M., Ketterling,R.P., Knudson,R.A., Feldman,A.L., Kadin,M.E., Drexler,H.G., MacLeod,R.A.F. ( 2013 ) t(8;9)(p22;p24)/PCM1-JAK2 Activates SOCS2 and SOCS3 via STAT5 PLoS One 8 (1) :e53767.

http://www.ncbi.nlm.nih.gov/pubmed/23372669
2013 Mehrshad,M., Amoozegar,M.A., Didari,M., Bagheri,M., ShahzadehFazeli,S.A., Schumann,P., Sproer,C., Sanchez-Porro,C., Ventosa,A. ( 2013 ) Bacillus halosaccharovorans sp. nov., a moderately halophilic bacterium from a hypersaline Iranian lake Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23291894
2013 Drexler,H.G., Chen,S., MacLeod,R.A. ( 2013 ) Would the real Waldenstrom cell line please stand up? Leuk Lymphoma 54 (2) :224-226.

http://www.ncbi.nlm.nih.gov/pubmed/22950966
2013 Lang,E., Schumann,P., Knapp,B.A., Kumar,R., Sproer,C., Insam,H. ( 2013 ) Budvicia diplopodorum sp. nov. and emended description of the genus Budvicia Int J Syst Evol Microbiol 63 (Pt 1) :260-267.

http://www.ncbi.nlm.nih.gov/pubmed/22407790
2013 Dirks,W.G., Drexler,H.G. ( 2013 ) STR DNA Typing of Human Cell Lines: Detection of Intra- and Interspecies Cross-Contamination Methods Mol Biol 946 :27-38.

http://www.ncbi.nlm.nih.gov/pubmed/23179824
2013 Ding,J., Romani,J., Zaborski,M., Macleod,R.A., Nagel,S., Drexler,H.G., Quentmeier,H. ( 2013 ) Inhibition of PI3K/mTOR Overcomes Nilotinib Resistance in BCR-ABL1 Positive Leukemia Cells through Translational Down-Regulation of MDM2 PLoS One 8 (12) :e83510.

http://www.ncbi.nlm.nih.gov/pubmed/24349524
2013 Kim,S.J., Jang,Y.H., Ahn,J.H., Weon,H.Y., Schumann,P., Chun,S.C., Kwon,S.W., Kim,W.G. ( 2013 ) Rudaeicoccus suwonensis gen. nov., sp. nov., an actinobacterium isolated from the epidermal tissue of a root of a Phalaenopsis orchid Int J Syst Evol Microbiol 63 (Pt 4) :1291-1296.

http://www.ncbi.nlm.nih.gov/pubmed/22798654
2013 Chen,S., Nagel,S., Kaufmann,M., Drexler,H.G., MacLeod,R.A.F. ( 2013 ) STAG2 (Stromal Antigen 2) Atlas of Genetics and Cytogenetics in Oncology and Haematology (December 2013)

2013 Kampfer,P., Glaeser,S.P., Schafer,J., Lodders,N., Martin,K., Schumann,P. ( 2013 ) Ornithinimicrobium murale sp. nov., isolated from an indoor wall colonized by moulds Int J Syst Evol Microbiol 63 (Pt 1) :119-123.

http://www.ncbi.nlm.nih.gov/pubmed/22888195
2013 Castro,F., Dirks,W.G., Fahnrich,S., Hotz-Wagenblatt,A., Pawlita,M., Schmitt,M. ( 2013 ) High-throughput SNP-based authentication of human cell lines Int J Cancer 132 (2) :308-314.

http://www.ncbi.nlm.nih.gov/pubmed/22700458
2013 Hamada,M., Tamura,T., Shibata,C., Yamamura,H., Hayakawa,M., Schumann,P., Suzuki,K.I. ( 2013 ) Paraoerskovia sediminicola sp. nov., an actinobacterium isolated from sea sediment, and emended description of the genus Paraoerskovia Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23291891
2013 Capes-Davis,A., Reid,Y.A., Kline,M.C., Storts,D.R., Strauss,E., Dirks,W.G., Drexler,H.G., Macleod,R.A., Sykes,G., Kohara,A., Nakamura,Y., Elmore,E., Nims,R.W., Alston-Roberts,C., Barallon,R., Los,G.V., Nardone,R.M., Price,P.J., Steuer,A., Thomson,J., Masters,J.R., Kerrigan,L. ( 2013 ) Match criteria for human cell line authentication: Where do we draw the line? Int J Cancer 132 (11) :2510-2519.

http://www.ncbi.nlm.nih.gov/pubmed/23136038
2013 Hahnke,S., Tindall,B.J., Schumann,P., Simon,M., Brinkhoff,T. ( 2013 ) Pelagimonas varians gen. nov., sp. nov., isolated from the southern North Sea Int J Syst Evol Microbiol 63 (Pt 3) :835-843.

http://www.ncbi.nlm.nih.gov/pubmed/22611199
2013 Capes-Davis,A., Alston-Roberts,C., Kerrigan,L., Reid,Y.A., Barrett,T., Burnett,E.C., Cooper,J.R., Dirks,W.G., Macleod,R.A., Drexler,H.G., Freshney,R.I., Healy,L., Kohara,A., Korch,C., Masters,J.R., Nakamura,Y., Nims,R.W., Storts,D.R. ( 2013 ) Beware imposters: MA-1, a novel MALT lymphoma cell line, is misidentified and corresponds to Pfeiffer, a diffuse large B-cell lymphoma cell line Genes Chromosomes Cancer 52 (10) :986-8.

http://www.ncbi.nlm.nih.gov/pubmed/23907998
2013 Ferreira,T., vanReenen,C.A., Endo,A., Sproer,C., Malan,A.P., Dicks,L.M. ( 2013 ) Description of Xenorhabdus khoisanae sp. nov., the symbiont of the entomopathogenic nematode Steinernema khoisanae Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23456807
2013 Didari,M., Amoozegar,M.A., Bagheri,M., Mehrshad,M., Schumann,P., Sproer,C., Sanchez-Porro,C., Ventosa,A. ( 2013 ) Bacillus persicus sp. nov., a halophilic bacterium from a hypersaline lake Int J Syst Evol Microbiol 63 (Pt 4) :1229-1234.

http://www.ncbi.nlm.nih.gov/pubmed/22771682
2013 DeBel,A., VanHoorde,K., Wybo,I., Vandoorslaer,K., Echahidi,F., DeBrandt,E., Schumann,P., Ieven,M., Soetens,O., Pierard,D., Vandamme,P. ( 2013 ) Staphylococcus jettensis sp. nov., a novel coagulase-negative staphylococcal species isolated from human clinical specimens Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23456811
2013 Cousin,S., Motreff,L., Gulat-Okalla,M.L., Gouyette,C., Sproer,C., Schumann,P., Begaud,E., Bouchier,C., Clermont,D., Bizet,C. ( 2013 ) Lactobacillus pasteurii sp. nov. and Lactobacillus hominis sp. nov Int J Syst Evol Microbiol 63 (Pt 1) :53-59.

http://www.ncbi.nlm.nih.gov/pubmed/22328611
2013 Camas,M., Sazak,A., Sproer,C., Klenk,H.P., Cetin,D., Guven,K., Sahin,N. ( 2013 ) Nonomuraea jabiensis sp. nov., isolated from arid soil Int J Syst Evol Microbiol 63 (Pt 1) :212-218.

http://www.ncbi.nlm.nih.gov/pubmed/22389281
2013 Camas,M., Sahin,N., Sazak,A., Spröer,C., Klenk,H.P. ( 2013 ) Amycolatopsis magusensis sp. nov., isolated from soil Int J Syst Evol Microbiol 63 (Pt 4) :1254-1260.

http://www.ncbi.nlm.nih.gov/pubmed/22771685
2013 Buss,S.N., Cole,J.A., Hannett,G.E., Nazarian,E.J., Nazarian,L., Coorevits,A., VanLandschoot,A., DeVos,P., Schumann,P., Musser,K.A., Wolfgang,W.J. ( 2013 ) Hazenella coriacea gen. nov., sp nov. isolated from clinical specimens in New York State Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23728377
2013 Vaas,L.A., Sikorski,J., Hofner,B., Fiebig,A., Buddruhs,N., Klenk,H.P., Göker,M. ( 2013 ) opm: an R package for analysing OmniLog(R) phenotype microarray data Bioinformatics

http://www.ncbi.nlm.nih.gov/pubmed/23740744
2013 Boubetra,D., Zitouni,A., Bouras,N., Mathieu,F., Lebrihi,A., Schumann,P., Spröer,C., Klenk,H.P., Sabaou,N. ( 2013 ) Saccharothrix saharensis sp. nov., a novel actinomycete isolated from Algerian Saharan soil Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23645017
2013 Liu,Z., Muller,J., Li,T., Alvey,R.M., Vogl,K., Frigaard,N.U., Rockwell,N.C., Boyd,E.S., Tomsho,L.P., Schuster,S.C., Henke,P., Rohde,M., Overmann,J., Bryant,D.A. ( 2013 ) Genomic analysis reveals key aspects of prokaryotic symbiosis in the phototrophic consortium "Chlorochromatium aggregatum" Genome Biol 14 (11) :R127.

2013 Boubetra,D., Zitouni,A., Bouras,N., Mathieu,F., Lebrihi,A., Schumann,P., Sproer,C., Klenk,H.P., Sabaou,N. ( 2013 ) Saccharothrix hoggarensis sp. nov., an actinomycete isolated from Saharan soil Int J Syst Evol Microbiol 63 (Pt 2) :549-453.

http://www.ncbi.nlm.nih.gov/pubmed/22523169
2013 Lefevre,C.T., Trubitsyn,D., Abreu,F., Kolinko,S., Jogler,C., deAlmeida,L.G., deVasconcelos,A.T., Kube,M., Reinhardt,R., Lins,U., Pignol,D., Schuler,D., Bazylinski,D.A., Ginet,N. ( 2013 ) Comparative genomic analysis of magnetotactic bacteria from the Deltaproteobacteria provides new insights into magnetite and greigite magnetosome genes required for magnetotaxis Environ Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23607663
2013 Bagheri,M., Amoozegar,M.A., Schumann,P., Didari,M., Mehrshad,M., Sproer,C., Sanchez-Porro,C., Ventosa,A. ( 2013 ) Ornithinibacillus halophilus sp. nov., a moderately halophilic, Gram-stain-positive, endospore-forming bacterium from a hypersaline lake Int J Syst Evol Microbiol 63 (Pt 3) :844-848.

http://www.ncbi.nlm.nih.gov/pubmed/22611200
2013 Jogler,M., Chen,H., Simon,J., Rohde,M., Busse,H.J., Klenk,H.P., Tindall,B.J., Overmann,J. ( 2013 ) Description of Sphingorhabdus planktonica gen. nov., sp. nov. and reclassification of three related members of the genus Sphingopyxis in the genus Sphingorhabdus gen. nov Int J Syst Evol Microbiol 63 (Pt 4) :1342-1349.

http://www.ncbi.nlm.nih.gov/pubmed/22798658
2013 Bagheri,M., Amoozegar,M.A., Didari,M., Makhdoumi-Kakhki,A., Schumann,P., Spröer,C., Sanchez-Porro,C., Ventosa,A. ( 2013 ) Marinobacter persicus sp. nov., a moderately halophilic bacterium from a saline lake in Iran Antonie Van Leeuwenhoek 104 (1) :47-54.

http://www.ncbi.nlm.nih.gov/pubmed/23592177
2013 Freese,H.M., Dalingault,H., Petersen,J., Pradella,S., Davenport,K., Teshima,H., Chen,A., Pati,A., Ivanova,N., Goodwin,L.A., Chain,P., Detter,J.C., Rohde,M., Gronow,S., Kyrpides,N.C., Woyke,T., Brinkhoff,T., Göker,M., Overmann,J., Klenk,H.P. ( 2013 ) Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566(T.) Stand Genomic Sci 8 (3) :450-64.

2013 Amoozegar,M.A., Makhdoumi-Kakhki,A., Ramezani,M., Nikou,M.M., Fazeli,S.A., Schumann,P., Ventosa,A. ( 2013 ) Limimonas halophila gen. nov., sp. nov., an extremely halophilic bacterium in the family Rhodospirillaceae Int J Syst Evol Microbiol 63 (Pt 4) :1562-1567.

http://www.ncbi.nlm.nih.gov/pubmed/22904212
2013 Amoozegar,M.A., Didari,M., Bagheri,M., ShahzadehFazeli,S.A., Schumann,P., Sproer,C., Sanchez-Porro,C., Ventosa,A. ( 2013 ) Bacillus salsus sp. nov., a novel halophilic bacterium from a hypersaline lake Int J Syst Evol Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23504967
2013 Chen,H., Jogler,M., Tindall,B.J., Klenk,H.P., Rohde,M., Busse,H.J., Overmann,J. ( 2013 ) Sphingomonas starnbergensis sp. nov., isolated from a prealpine freshwater lake Int J Syst Evol Microbiol 63 (Pt 3) :1017-1023.

http://www.ncbi.nlm.nih.gov/pubmed/22685105
2013 Ziegler,S., Waidner,B., Itoh,T., Schumann,P., Spring,S., Gescher,J. ( 2013 ) Metallibacterium scheffleri gen. nov., sp. nov., an alkalinizing gammaproteobacterium isolated from an acidic biofilm Int J Syst Evol Microbiol 63 (Pt 4) :1499-504.

http://www.ncbi.nlm.nih.gov/pubmed/22863988
2013 Vaas,L.A., Sikorski,J., Hofner,B., Fiebig,A., Buddruhs,N., Klenk,H.P., Göker,M. ( 2013 ) opm: an R package for analysing OmniLog(R) phenotype microarray data Bioinformatics

http://www.ncbi.nlm.nih.gov/pubmed/23740744
2013 Losey,N.A., Stevenson,B.S., Verbarg,S., Rudd,S., Moore,E.R., Lawson,P.A. ( 2013 ) Fontimonas thermophila gen. nov., sp. nov., a moderately thermophilic bacterium isolated from a freshwater hot spring, and proposal of Solimonadaceae fam. nov. to replace Sinobacteraceae Zhou et al. 2008 Int J Syst Evol Microbiol 63 (Pt 1) :254-9.

http://www.ncbi.nlm.nih.gov/pubmed/22407788
2013 Liolios,K., Abt,B., Scheuner,C., Teshima,H., Held,B., Lapidus,A., Nolan,M., Lucas,S., Deshpande,S., Cheng,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Rohde,M., Tindall,B.J., Detter,J.C., Göker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Woyke,T., Klenk,H.-P., Kyrpides,N.C. ( 2013 ) Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692T) from the alkaline Lake Magadi in the East African Rift. Stand Genomic Sci 7 :165-176.

2013 Lal,D., Khan,F., Gupta,S.K., Schumann,P., Lal,R. ( 2013 ) Edaphobacillus lindanitolerans gen. nov., sp. nov., isolated from hexachlorocyclohexane (HCH) contaminated soil. J Basic Microbiol :1-8.

http://www.ncbi.nlm.nih.gov/pubmed/23322487
2013 Freese,H.M., Martin-Creuzburg,D. ( 2013 ) Food quality of mixed bacteria-algae diets for Daphnia magna Hydrobiologia

2013 Freese,H.M., Martin-Creuzburg,D. ( 2013 ) Food quality of mixed bacteria-algae diets for Daphnia magna Hydrobiologia

2013 Foesel,B.U., Rohde,M., Overmann,J. ( 2013 ) Blastocatella fastidiosa gen. nov., sp. nov., isolated from semiarid savanna soil - the first described species of Acidobacteria subdivision 4 Syst Appl Microbiol 36 (2) :82-89.

http://www.ncbi.nlm.nih.gov/pubmed/23266188
2013 Foesel,B.U., Nagele,V., Naether,A., Wust,P.K., Weinert,J., Bonkowski,M., Lohaus,G., Polle,A., Alt,F., Oelmann,Y., Fischer,M., Friedrich,M.W., Overmann,J. ( 2013 ) Determinants of Acidobacteria activity inferred from the relative abundances of 16S rRNA transcripts in German grassland and forest soils Environ Microbiol

http://www.ncbi.nlm.nih.gov/pubmed/23802854
2013 Bandyopadhyay,S., Schumann,P., Das,S.K. ( 2013 ) Pannonibacter indica sp. nov., a highly arsenate-tolerant bacterium isolated from a hot spring in India. Arch Microbiol 195 (1) :1-8.

http://www.ncbi.nlm.nih.gov/pubmed/22940883
2013 Amoozegar,M.A., Bagheri,M., Didari,M., ShahzedehFazeli,S.A., Schumann,P., Sanchez-Porro,C., Ventosa,A. ( 2013 ) Saliterribacillus persicus gen. nov., sp. nov., a moderately halophilic bacterium isolated from a hypersaline lake Int J Syst Evol Microbiol 63 (Pt 1) :345-351.

http://www.ncbi.nlm.nih.gov/pubmed/22447700
2013 Addou,A.N., Schumann,P., Spröer,C., Bouanane-Darenfed,A., Amarouche-Yala,S., Hacene,H., Cayol,J.L., Fardeau,M.L. ( 2013 ) Melghirimyces thermohalophilus sp. nov., a thermoactinomycete isolated from an Algerian salt lake Int J Syst Evol Microbiol 63 (Pt 5) :1717-1722.

http://www.ncbi.nlm.nih.gov/pubmed/23041632
2013 Abt,B., Göker,M., Scheuner,C., Han,C., Lu,M., Misra,M., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Chang,J.F., Tapia,R., Goodwin,L.A., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Mikhailova,N., Huntemann,M., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Jeffries,C.D., Rohde,M., Spring,S., Gronow,S., Detter,J.C., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Woyke,T., Klenk,H.-P. ( 2013 ) Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema. Stand Genomic Sci 8 :88-105.

2013 Steen,A., Utkur,F.O., Borrero-deAcuna,J.M., Bunk,B., Roselius,L., Buhler,B., Jahn,D., Schobert,M. ( 2013 ) Construction and characterization of nitrate and nitrite respiring Pseudomonas putida KT2440 strains for anoxic biotechnical applications J Biotechnol 163 (2) :155-165.

http://www.ncbi.nlm.nih.gov/pubmed/23036925
2013 Schomburg,I., Chang,A., Placzek,S., Sohngen,C., Rother,M., Lang,M., Munaretto,C., Ulas,S., Stelzer,M., Grote,A., Scheer,M., Schomburg,D. ( 2013 ) BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA Nucleic Acids Res 41 (Database issue) :D764-D772.

http://www.ncbi.nlm.nih.gov/pubmed/23203881
2012 Zhang,Y.J., Tang,S.K., Shi,R., Klenk,H.P., Chen,C., Yang,L.L., Zhou,Y., Li,W.J. ( 2012 ) Salinisphaera halophila sp. nov., a moderately halophilic bacterium isolated from brine of a salt well Int J Syst Evol Microbiol 62 (Pt 9) :2174-2179.

http://www.ncbi.nlm.nih.gov/pubmed/22058321
2012 Yang,L.L., Ao,T., Wang,X.H., He,J., Klenk,H.P., Tang,S.K., Li,W.J. ( 2012 ) Proposal of Intrasporangium mesophilum sp. nov., and reclassification of Humihabitans oryzae Kageyama et al. 2007 as Intrasporangium oryzae comb. nov. Int J Syst Evol Microbiol 62 (Pt 5) :1037-1041.

http://www.ncbi.nlm.nih.gov/pubmed/21685254
2012 Xing,K., Bian,G.K., Qin,S., Klenk,H.P., Yuan,B., Zhang,Y.J., Li,W.J., Jiang,J.H. ( 2012 ) Kibdelosporangium phytohabitans sp. nov., a novel endophytic actinomycete isolated from oil-seed plant Jatropha curcas L. containing 1-aminocyclopropane-1-carboxylic acid deaminase Antonie Van Leeuwenhoek 101 (2) :433-441.

http://www.ncbi.nlm.nih.gov/pubmed/21989686
2012 Vaas,L.A., Sikorski,J., Michael,V., Göker,M., Klenk,H.P. ( 2012 ) Visualization and curve-parameter estimation strategies for efficient exploration of phenotype microarray kinetics PLoS ONE 7 (4) :e34846.

http://www.ncbi.nlm.nih.gov/pubmed/22536335
2012 Stielow,J.B., Bratek,Z., Klenk,H.P., Winter,S., Menzel,W. ( 2012 ) A novel mitovirus from the hypogeous ectomycorrhizal fungus Tuber excavatum Arch Virol. 157 :787-790.

http://www.ncbi.nlm.nih.gov/pubmed/22286751
2012 Stielow,J.B., Vaas,L.A., Göker,M., Hoffmann,P., Klenk,H.P. ( 2012 ) Charcoal filter paper improves the viability of cryopreserved filamentous ectomycorrhizal and saprotrophic Basidiomycota and Ascomycota Mycologia 104 (1) :324-330.

http://www.ncbi.nlm.nih.gov/pubmed/21914821
2012 Ochwo-Ssemakula,M., Hakiza,J.J., Adipala,E., Edema,R., Redinbaugh,M.G., Aritua,V., Winter,S. ( 2012 ) Characterization and distribution of a Potyvirus associated with passion fruit woodiness disease in Uganda Plant Dis. 96 :659-665.

2012 Menzel,W., Winter,S. ( 2012 ) Sequencing of the Tamus red mosaic virus genome: further evidence that it is a distinct species of the genus Potexvirus Virus Genes 44 (1) :120-123.

http://www.ncbi.nlm.nih.gov/pubmed/21881939
2012 Stieglmeier,M., Rettberg,P., Barczyk,S., Bohmeier,M., Pukall,R., Wirth,R., Moissl-Eichinger,C. ( 2012 ) Abundance and diversity of microbial inhabitants in European spacecraft-associated clean rooms Astrobiology 12 (6) :572-585.

http://www.ncbi.nlm.nih.gov/pubmed/22794299
2012 Menzel,W., Hamacher,J., Weissbrodt,S., Winter,S. ( 2012 ) Complete Nucleotide Sequence of the RNA 3 of Bacopa chlorosis virus and Production of Polyclonal Antibodies to a Recombinant Coat Protein Journal of Phytopathology 160 (3) :163-165.

http://dx.doi.org/10.1111/j.1439-0434.2011.01877.x
2012 Setaro,S.D., Garnica,S., Herrera,P.I., Suárez,J.P., Göker,M. ( 2012 ) A clustering optimization strategy to estimate species richness of Sebacinales in the tropical Andes based on molecular sequences from distinct DNA regions Biodivers Conserv 21 (9) :2269-2285.

2012 Martelli,G.P., AbouGhanem-Sabanadzovic,N., Agranovsky,A.A., AlRwahnih,M., Dolja,V.V., Dovas,C.I., Fuchs,M., Gugerli,P., Hu,J.S., Jelkmann,W., Katis,N.I., Maliogka,V.I., Melzer,M.J., Menzel,W., Minafra,A., Rott,M.E., Rowhani,A., Sabanadzovic,S., Saldarelli,P. ( 2012 ) Taxonomic revision of the family Closteroviridae with special reference to the grapevine leafroll-associated members of the genus Ampleovirus and the putative species unassigned to the family Journal of Plant Pathology 94 :7-19.

http://dx.doi.org/10.4454/jpp.fa.2012.022
2012 Jelkmann,W., Mikona,C., Turturo,C., Navarro,B., Rott,M.E., Menzel,W., Saldarelli,P., Minafra,A., Martelli,G.P. ( 2012 ) Molecular characterization and taxonomy of grapevine leafroll-associated virus 7 Arch Virol. 157 (2) :359-362.

http://www.ncbi.nlm.nih.gov/pubmed/22109709