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Literature

Here you will find all publications from the department Microbial Ecology and Diversity Research. For a complete list of the DSMZ publications, click here.

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Publications
2018 Heeger,F., Bourne,E.C., Baschien,C., Yurkov,A., Bunk,B., Sproer,C., Overmann,J., Mazzoni,C.J., Monaghan,M.T. ( 2018 ) Long-read DNA metabarcoding of ribosomal RNA in the analysis of fungi from aquatic environments Mol Ecol Resour 18 (6) :1500-1514.

https://www.ncbi.nlm.nih.gov/pubmed/30106226
2018 Seugendo,M., Janssen,I., Lang,V., Hasibuan,I., Bohne,W., Cooper,P., Daniel,R., Gunka,K., Kusumawati,R.L., Mshana,S.E., vonMuller,L., Okamo,B., Ortlepp,J.R., Overmann,J., Riedel,T., Rupnik,M., Zimmermann,O., Gross,U. ( 2018 ) Prevalence and Strain Characterization of Clostridioides (Clostridium) difficile in Representative Regions of Germany, Ghana, Tanzania and Indonesia - A Comparative Multi-Center Cross-Sectional Study Front Microbiol 9 :1843.

https://www.ncbi.nlm.nih.gov/pubmed/30131799
2018 Ramirez-Vargas,G., Lopez-Urena,D., Badilla,A., Orozco-Aguilar,J., Murillo,T., Rojas,P., Riedel,T., Overmann,J., Gonzalez,G., Chaves-Olarte,E., Quesada-Gomez,C., Rodriguez,C. ( 2018 ) Novel Clade C-I Clostridium difficile strains escape diagnostic tests, differ in pathogenicity potential and carry toxins on extrachromosomal elements Sci Rep 8 (1) :13951.

https://www.ncbi.nlm.nih.gov/pubmed/30224751
2018 Lubke,A.L., Minatelli,S., Riedel,T., Lugert,R., Schober,I., Sproer,C., Overmann,J., Gross,U., Zautner,A.E., Bohne,W. ( 2018 ) The transducer-like protein Tlp12 of Campylobacter jejuni is involved in glutamate and pyruvate chemotaxis BMC Microbiol 18 (1) :111.

https://www.ncbi.nlm.nih.gov/pubmed/30200886
2018 Becker,M., Patz,S., Becker,Y., Berger,B., Drungowski,M., Bunk,B., Overmann,J., Sproer,C., Reetz,J., TchuisseuTchakounte,G.V., Ruppel,S. ( 2018 ) Comparative Genomics Reveal a Flagellar System, a Type VI Secretion System and Plant Growth-Promoting Gene Clusters Unique to the Endophytic Bacterium Kosakonia radicincitans Front Microbiol 9 :1997.

https://www.ncbi.nlm.nih.gov/pubmed/30214433
2018 Bajerski,F., Stock,J., Hanf,B., Darienko,T., Heine-Dobbernack,E., Lorenz,M., Naujox,L., Keller,E.R.J., Schumacher,H.M., Friedl,T., Eberth,S., Mock,H.P., Kniemeyer,O., Overmann,J. ( 2018 ) ATP Content and Cell Viability as Indicators for Cryostress Across the Diversity of Life Front Physiol 9 :921.

https://www.ncbi.nlm.nih.gov/pubmed/30065659
2018 Ludewig-Klingner,A.K., Michael,V., Jarek,M., Brinkmann,H., Petersen,J. ( 2018 ) Distribution and Evolution of Peroxisomes in Alveolates (Apicomplexa, Dinoflagellates, Ciliates) Genome Biol Evol 10 (1) :1-13.

https://www.ncbi.nlm.nih.gov/pubmed/29202176
2018 Schall,P., Gossner,M.M., Heinrichs,S., Fischer,M., Boch,S., Prati,D., Jung,K., Baumgartner,V., Blaser,S., Bohm,S., Buscot,F., Daniel,R., Goldmann,K., Kaiser,K., Kahl,T., Lange,M., Muller,J., Overmann,J., Renner,S.C., Schulze,E.D., Sikorski,J., Tschapka,M., Turke,M., Weisser,W.W., Wemheuer,B., Wubet,T., Ammer,C. ( 2018 ) The impact of even-aged and uneven-aged forest management on regional biodiversity of multiple taxa in European beech forests Journal of Applied Ecology 55 (1) :267-278.

://WOS:000417764600027
2018 Gutleben,J., ChaibDeMares,M., vanElsas,J.D., Smidt,H., Overmann,J., Sipkema,D. ( 2018 ) The multi-omics promise in context: from sequence to microbial isolate Crit Rev Microbiol 44 (2) :212-229.

https://www.ncbi.nlm.nih.gov/pubmed/28562180
2018 Klotz,F., Brinkhoff,T., Freese,H.M., Wietz,M., Teske,A., Simon,M., Giebel,H.A. ( 2018 ) Tritonibacter horizontis gen. nov., sp. nov., a member of the Rhodobacteraceae, isolated from the Deepwater Horizon oil spill Int J Syst Evol Microbiol 68 (3) :736-744.

https://www.ncbi.nlm.nih.gov/pubmed/29458459
2018 Tomasch,J., Wang,H., Hall,A.T.K., Patzelt,D., Preusse,M., Petersen,J., Brinkmann,H., Bunk,B., Bhuju,S., Jarek,M., Geffers,R., Lang,A.S., Wagner-Dobler,I. ( 2018 ) Packaging of Dinoroseobacter shibae DNA into Gene Transfer Agent Particles Is Not Random Genome Biol Evol 10 (1) :359-369.

https://www.ncbi.nlm.nih.gov/pubmed/29325123
2018 Steglich,M., Hofmann,J.D., Helmecke,J., Sikorski,J., Sproer,C., Riedel,T., Bunk,B., Overmann,J., Neumann-Schaal,M., Nübel,U. ( 2018 ) Convergent Loss of ABC Transporter Genes From Clostridioides difficile Genomes Is Associated With Impaired Tyrosine Uptake and p-Cresol Production Front Microbiol 9 :901.

https://www.ncbi.nlm.nih.gov/pubmed/29867812
2018 Mannala,G.K., Koettnitz,J., Mohamed,W., Sommer,U., Lips,K.S., Sproer,C., Bunk,B., Overmann,J., Hain,T., Heiss,C., Domann,E., Alt,V. ( 2018 ) Whole-genome comparison of high and low virulent Staphylococcus aureus isolates inducing implant-associated bone infections Int J Med Microbiol 308 (5) :505-513.

https://www.ncbi.nlm.nih.gov/pubmed/29739668
2018 Brinkmann,H., Goker,M., Koblizek,M., Wagner-Dobler,I., Petersen,J. ( 2018 ) Horizontal operon transfer, plasmids, and the evolution of photosynthesis in Rhodobacteraceae ISME J 12 (8) :1994-2010.

https://www.ncbi.nlm.nih.gov/pubmed/29795276
2018 Reiner,J.E., Lapp,C.J., Bunk,B., Sproer,C., Overmann,J., Gescher,J. ( 2018 ) Complete Genome Sequence of Kyrpidia sp. Strain EA-1, a Thermophilic Knallgas Bacterium, Isolated from the Azores Genome Announc 6 (3)

https://www.ncbi.nlm.nih.gov/pubmed/29348358
2018 Pati,N.B., Doijad,S.P., Schultze,T., Mannala,G.K., Yao,Y., Jaiswal,S., Ryan,D., Suar,M., Gwozdzinski,K., Bunk,B., Mraheil,M.A., Marahiel,M.A., Hegemann,J.D., Sproer,C., Goesmann,A., Falgenhauer,L., Hain,T., Imirzalioglu,C., Mshana,S.E., Overmann,J., Chakraborty,T. ( 2018 ) Enterobacter bugandensis: a novel enterobacterial species associated with severe clinical infection Sci Rep 8 (1) :5392.

https://www.ncbi.nlm.nih.gov/pubmed/29599516
2018 Nell,S., Estibariz,I., Krebes,J., Bunk,B., Graham,D.Y., Overmann,J., Song,Y., Sproer,C., Yang,I., Wex,T., Korlach,J., Malfertheiner,P., Suerbaum,S. ( 2018 ) Genome and Methylome Variation in Helicobacter pylori With a cag Pathogenicity Island During Early Stages of Human Infection Gastroenterology 154 (3) :612-623 e7.

https://www.ncbi.nlm.nih.gov/pubmed/29066327
2018 Kemter,F.S., Messerschmidt,S.J., Schallopp,N., Sobetzko,P., Lang,E., Bunk,B., Sproer,C., Teschler,J.K., Yildiz,F.H., Overmann,J., Waldminghaus,T. ( 2018 ) Synchronous termination of replication of the two chromosomes is an evolutionary selected feature in Vibrionaceae PLoS Genet 14 (3) :e1007251.

https://www.ncbi.nlm.nih.gov/pubmed/29505558
2018 Gross,U., Brzuszkiewicz,E., Gunka,K., Starke,J., Riedel,T., Bunk,B., Sproer,C., Wetzel,D., Poehlein,A., Chibani,C., Bohne,W., Overmann,J., Zimmermann,O., Daniel,R., Liesegang,H. ( 2018 ) Comparative genome and phenotypic analysis of three Clostridioides difficile strains isolated from a single patient provide insight into multiple infection of C. difficile BMC Genomics 19 (1) :1.

https://www.ncbi.nlm.nih.gov/pubmed/29291715
2018 Gutleben,J., ChaibDeMares,M., vanElsas,J.D., Smidt,H., Overmann,J., Sipkema,D. ( 2018 ) The multi-omics promise in context: from sequence to microbial isolate Crit Rev Microbiol 44 (2) :212-229.

https://www.ncbi.nlm.nih.gov/pubmed/28562180
2018 Pascual,J., Foesel,B.U., Geppert,A., Huber,K.J., Boedeker,C., Luckner,M., Wanner,G., Overmann,J. ( 2018 ) Roseisolibacter agri gen. nov., sp. nov., a novel slow-growing member of the under-represented phylum Gemmatimonadetes Int J Syst Evol Microbiol 68 (4) :1028-1036.

https://www.ncbi.nlm.nih.gov/pubmed/29458671
2018 Becker,K.W., Elling,F.J., Schroder,J.M., Lipp,J.S., Goldhammer,T., Zabel,M., Elvert,M., Overmann,J., Hinrichs,K.U. ( 2018 ) Isoprenoid quinones resolve the stratification of microbial redox processes in a biogeochemical continuum from the photic zone to deep anoxic sediments of the Black Sea Appl Environ Microbiol

https://www.ncbi.nlm.nih.gov/pubmed/29523543
2018 Murillo,T., Ramirez-Vargas,G., Riedel,T., Overmann,J., Andersen,J.M., Guzman-Verri,C., Chaves-Olarte,E., Rodriguez,C. ( 2018 ) Two Groups of Cocirculating, Epidemic Clostridiodes difficile Strains Microdiversify through Different Mechanisms Genome Biol Evol 10 (3) :982-998.

https://www.ncbi.nlm.nih.gov/pubmed/29617810
2017 Zautner,A.E., Bunk,B., Pfeifer,Y., Sproer,C., Reichard,U., Eiffert,H., Scheithauer,S., Gross,U., Overmann,J., Bohne,W. ( 2017 ) Monitoring microevolution of OXA-48-producing Klebsiella pneumoniae ST147 in a hospital setting by SMRT sequencing J Antimicrob Chemother 72 (10) :2737-2744.

https://www.ncbi.nlm.nih.gov/pubmed/29091199
2017 Will,S.E., Neumann-Schaal,M., Heydorn,R.L., Bartling,P., Petersen,J., Schomburg,D. ( 2017 ) The limits to growth - energetic burden of the endogenous antibiotic tropodithietic acid in Phaeobacter inhibens DSM 17395 PLoS One 12 (5) :e0177295.

https://www.ncbi.nlm.nih.gov/pubmed/28481933
2017 Simon,M., Scheuner,C., Meier-Kolthoff,J.P., Brinkhoff,T., Wagner-Dobler,I., Ulbrich,M., Klenk,H.P., Schomburg,D., Petersen,J., Goker,M. ( 2017 ) Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats Isme Journal 11 (6) :1483-1499.

://WOS:000401323100016
2017 Schmidt,I., Pieper,A., Wichmann,H., Bunk,B., Huber,K., Overmann,J., Walla,P.J., Schroder,U. ( 2017 ) In Situ Autofluorescence Spectroelectrochemistry for the Study of Microbial Extracellular Electron Transfer Chemelectrochem 4 (10) :2515-2519.

://WOS:000412892600014
2017 Riedel,T., Wetzel,D., Hofmann,J.D., Plorin,S., Dannheim,H., Berges,M., Zimmermann,O., Bunk,B., Schober,I., Sproer,C., Liesegang,H., Jahn,D., Overmann,J., Gross,U., Neumann-Schaal,M. ( 2017 ) High metabolic versatility of different toxigenic and non-toxigenic Clostridioides difficile isolates Int J Med Microbiol 307 (6) :311-320.

https://www.ncbi.nlm.nih.gov/pubmed/28619474
2017 Mannala,G.K., Hain,T., Sproer,C., Bunk,B., Overmann,J., Alt,V., Domann,E. ( 2017 ) Complete Genome and Plasmid Sequences of Staphylococcus aureus EDCC 5055 (DSM 28763), Used To Study Implant-Associated Infections Genome Announc 5 (8)

https://www.ncbi.nlm.nih.gov/pubmed/28232428
2017 Ghosh,H., Bunk,B., Doijad,S., Schmiedel,J., Falgenhauer,L., Sproer,C., Imirzalioglu,C., Overmann,J., Chakraborty,T. ( 2017 ) Complete Genome Sequence of blaCTX-M-27-Encoding Escherichia coli Strain H105 of Sequence Type 131 Lineage C1/H30R Genome Announc 5 (31)

https://www.ncbi.nlm.nih.gov/pubmed/28774984
2017 Falgenhauer,L., Ghosh,H., Doijad,S., Yao,Y., Bunk,B., Sproer,C., Kaase,M., Hilker,R., Overmann,J., Imirzalioglu,C., Chakraborty,T. ( 2017 ) Genome Analysis of the Carbapenem- and Colistin-Resistant Escherichia coli Isolate NRZ14408 Reveals Horizontal Gene Transfer Pathways towards Panresistance and Enhanced Virulence Antimicrob Agents Chemother 61 (4)

https://www.ncbi.nlm.nih.gov/pubmed/28096159
2017 Donner,J., Bunk,B., Schober,I., Sproer,C., Bergmann,S., Jarek,M., Overmann,J., Wagner-Dobler,I. ( 2017 ) Complete Genome Sequences of Three Multidrug-Resistant Clinical Isolates of Streptococcus pneumoniae Serotype 19A with Different Susceptibilities to the Myxobacterial Metabolite Carolacton Genome Announc 5 (7)

https://www.ncbi.nlm.nih.gov/pubmed/28209832
2017 Doberenz,S., Eckweiler,D., Reichert,O., Jensen,V., Bunk,B., Sproer,C., Kordes,A., Frangipani,E., Luong,K., Korlach,J., Heeb,S., Overmann,J., Kaever,V., Haussler,S. ( 2017 ) Identification of a Pseudomonas aeruginosa PAO1 DNA Methyltransferase, Its Targets, and Physiological Roles MBio 8 (1)

https://www.ncbi.nlm.nih.gov/pubmed/28223461
2017 Dannheim,H., Riedel,T., Neumann-Schaal,M., Bunk,B., Schober,I., Sproer,C., Chibani,C.M., Gronow,S., Liesegang,H., Overmann,J., Schomburg,D. ( 2017 ) Manual curation and reannotation of the genomes of Clostridium difficile 630Deltaerm and C. difficile 630 J Med Microbiol 66 (3) :286-293.

https://www.ncbi.nlm.nih.gov/pubmed/28357980
2017 ChaibDeMares,M., Sipkema,D., Huang,S., Bunk,B., Overmann,J., vanElsas,J.D. ( 2017 ) Host Specificity for Bacterial, Archaeal and Fungal Communities Determined for High- and Low-Microbial Abundance Sponge Species in Two Genera Front Microbiol 8 :2560.

https://www.ncbi.nlm.nih.gov/pubmed/29326681
2017 Breider,S., Freese,H.M., Sproer,C., Simon,M., Overmann,J., Brinkhoff,T. ( 2017 ) Phaeobacter porticola sp nov., an antibiotic-producing bacterium isolated from a sea harbour International Journal of Systematic and Evolutionary Microbiology 67 (7) :2153-2159.

://WOS:000408263300013
2017 Bartling,P., Brinkmann,H., Bunk,B., Overmann,J., Goker,M., Petersen,J. ( 2017 ) The Composite 259-kb Plasmid of Martelella mediterranea DSM 17316(T)-A Natural Replicon with Functional RepABC Modules from Rhodobacteraceae and Rhizobiaceae Front Microbiol 8 :1787.

https://www.ncbi.nlm.nih.gov/pubmed/28983283
2017 Riedl,S., Brown,R.K., Klockner,S., Huber,K.J., Bunk,B., Overmann,J., Schroder,U. ( 2017 ) Successive Conditioning in Complex Artificial Wastewater Increases the Performance of Electrochemically Active Biofilms Treating Real Wastewater Chemelectrochem 4 (12) :3081-3090.

://WOS:000419269000009
2017 Freese,H.M., Sikorski,J., Bunk,B., Scheuner,C., Meier-Kolthoff,J.P., Sproer,C., Gram,L., Overmann,J. ( 2017 ) Trajectories and Drivers of Genome Evolution in Surface-Associated Marine Phaeobacter Genome Biol Evol 9 (12) :3297-3311.

https://www.ncbi.nlm.nih.gov/pubmed/29194520
2017 Riedel,T., Wittmann,J., Bunk,B., Schober,I., Sproer,C., Gronow,S., Overmann,J. ( 2017 ) A Clostridioides difficile bacteriophage genome encodes functional binary toxin-associated genes J Biotechnol 250 :23-28.

https://www.ncbi.nlm.nih.gov/pubmed/28216103
2017 Huber,K.J., Geppert,A.M., Gross,U., Luckner,M., Wanner,G., Cooper,P., Abakah,J., Janssen,I., Overmann,J. ( 2017 ) Aridibacter nitratireducens sp nov., a member of the family Blastocatellaceae, class Blastocatellia, isolated from an African soil International Journal of Systematic and Evolutionary Microbiology 67 (11) :4487-4493.

://WOS:000414976000031
2017 Vieira,S., Luckner,M., Wanner,G., Overmann,J. ( 2017 ) Luteitalea pratensis gen. nov., sp nov a new member of subdivision 6 Acidobacteria isolated from temperate grassland soil International Journal of Systematic and Evolutionary Microbiology 67 (5) :1408-1414.

://WOS:000403696100045
2017 Sonnenschein,E.C., Phippen,C.B.W., Nielsen,K.F., Mateiu,R.V., Melchiorsen,J., Gram,L., Overmann,J., Freese,H.M. ( 2017 ) Phaeobacter piscinae sp nov., a species of the Roseobacter group and potential aquaculture probiont International Journal of Systematic and Evolutionary Microbiology 67 (11) :4559-4564.

://WOS:000414976000042
2017 Pascual,J., Foesel,B.U., Geppert,A., Huber,K.J., Overmann,J. ( 2017 ) Flaviaesturariibacter luteus sp nov., isolated from an agricultural floodplain soil, and emended description of the genus Flaviaesturariibacter International Journal of Systematic and Evolutionary Microbiology 67 (6) :1727-1734.

://WOS:000405503800019
2017 Dedysh,S.N., Kulichevskaya,I.S., Huber,K.J., Overmann,J. ( 2017 ) Defining the taxonomic status of described subdivision 3 Acidobacteria: proposal of Bryobacteraceae fam. nov. International Journal of Systematic and Evolutionary Microbiology 67 (2) :498-501.

://WOS:000397002800050
2017 Reimer,L.C., Sohngen,C., Vetcininova,A., Overmann,J. ( 2017 ) Mobilization and integration of bacterial phenotypic data-Enabling next generation biodiversity analysis through the BacDive metadatabase J Biotechnol 261 :187-193.

https://www.ncbi.nlm.nih.gov/pubmed/28487186
2017 Wendling,C.C., Piecyk,A., Refardt,D., Chibani,C., Hertel,R., Liesegang,H., Bunk,B., Overmann,J., Roth,O. ( 2017 ) Tripartite species interaction: eukaryotic hosts suffer more from phage susceptible than from phage resistant bacteria BMC Evol Biol 17 (1) :98.

https://www.ncbi.nlm.nih.gov/pubmed/28399796
2017 Donner,J., Reck,M., Bunk,B., Jarek,M., App,C.B., Meier-Kolthoff,J.P., Overmann,J., Muller,R., Kirschning,A., Wagner-Dobler,I. ( 2017 ) The Biofilm Inhibitor Carolacton Enters Gram-Negative Cells: Studies Using a TolC-Deficient Strain of Escherichia coli mSphere 2 (5)

https://www.ncbi.nlm.nih.gov/pubmed/28959742
2017 Bajerski,F., Wagner,D., Mangelsdorf,K. ( 2017 ) Cell Membrane Fatty Acid Composition of Chryseobacterium frigidisoli PB4(T), Isolated from Antarctic Glacier Forefield Soils, in Response to Changing Temperature and pH Conditions Front Microbiol 8 :677.

https://www.ncbi.nlm.nih.gov/pubmed/28469614
2017 Beaudry,F.E.G., Iwanicki,T.W., Mariluz,B.R.Z., Darnet,S., Brinkmann,H., Schneider,P., Taylor,J.S. ( 2017 ) The non-visual opsins: eighteen in the ancestor of vertebrates, astonishing increase in ray-finned fish, and loss in amniotes J Exp Zool B Mol Dev Evol 328 (7) :685-696.

https://www.ncbi.nlm.nih.gov/pubmed/29059507
2017 Dickschat,J.S., Rinkel,J., Klapschinski,T., Petersen,J. ( 2017 ) Characterisation of the l-Cystine beta-Lyase PatB from Phaeobacter inhibens: An Enzyme Involved in the Biosynthesis of the Marine Antibiotic Tropodithietic Acid Chembiochem 18 (22) :2260-2267.

https://www.ncbi.nlm.nih.gov/pubmed/28895253
2017 Falagan,C., Foesel,B., Johnson,B. ( 2017 ) Acidicapsa ferrireducens sp. nov., Acidicapsa acidiphila sp. nov., and Granulicella acidiphila sp. nov.: novel acidobacteria isolated from metal-rich acidic waters Extremophiles 21 (3) :459-469.

https://www.ncbi.nlm.nih.gov/pubmed/28229259
2017 Damste,J.S.S., Rijpstra,W.I.C., Dedysh,S.N., Foesel,B.U., Villanueva,L. ( 2017 ) Pheno- and Genotyping of Hopanoid Production in Acidobacteria Front Microbiol 8 :968.

https://www.ncbi.nlm.nih.gov/pubmed/28642737
2017 Irisarri,I., Baurain,D., Brinkmann,H., Delsuc,F., Sire,J.Y., Kupfer,A., Petersen,J., Jarek,M., Meyer,A., Vences,M., Philippe,H. ( 2017 ) Phylotranscriptomic consolidation of the jawed vertebrate timetree Nat Ecol Evol 1 (9) :1370-1378.

https://www.ncbi.nlm.nih.gov/pubmed/28890940
2017 Lagkouvardos,I., Overmann,J., Clavel,T. ( 2017 ) Cultured microbes represent a substantial fraction of the human and mouse gut microbiota Gut Microbes 8 (5) :493-503.

https://www.ncbi.nlm.nih.gov/pubmed/28418756
2017 Pascual,J., vonHoermann,C., Rottler-Hoermann,A.M., Nevo,O., Geppert,A., Sikorski,J., Huber,K.J., Steiger,S., Ayasse,M., Overmann,J. ( 2017 ) Function of bacterial community dynamics in the formation of cadaveric semiochemicals during in situ carcass decomposition Environ Microbiol 19 (8) :3310-3322.

https://www.ncbi.nlm.nih.gov/pubmed/28631411
2017 Overmann,J., Abt,B., Sikorski,J. ( 2017 ) Present and Future of Culturing Bacteria Annu Rev Microbiol 71 :711-730.

https://www.ncbi.nlm.nih.gov/pubmed/28731846
2017 Freese,H.M., Methner,A., Overmann,J. ( 2017 ) Adaptation of Surface-Associated Bacteria to the Open Ocean: A Genomically Distinct Subpopulation of Phaeobacter gallaeciensis Colonizes Pacific Mesozooplankton Front Microbiol 8 :1659.

https://www.ncbi.nlm.nih.gov/pubmed/28912769
2017 Petersen,J., Wagner-Dobler,I. ( 2017 ) Plasmid Transfer in the Ocean - A Case Study from the Roseobacter Group Front Microbiol 8 :1350.

https://www.ncbi.nlm.nih.gov/pubmed/28769910
2017 Reimer,L.C., Will,S.E., Schomburg,D. ( 2017 ) The fate of lysine: Non-targeted stable isotope analysis reveals parallel ways for lysine catabolization in Phaeobacter inhibens PLoS One 12 (10) :e0186395.

https://www.ncbi.nlm.nih.gov/pubmed/29059219
2017 Overmann,J., Scholz,A.H. ( 2017 ) Microbiological Research Under the Nagoya Protocol: Facts and Fiction Trends Microbiol 25 (2) :85-88.

https://www.ncbi.nlm.nih.gov/pubmed/27887771
2017 Shang,Y., Sikorski,J., Bonkowski,M., Fiore-Donno,A.-M., Kandeler,E., Marhan,S., Boeddinghaus,R.S., Solly,E.F., Schrumpf,M., Schöning,I., Wubet,T., Buscot,F., Overmann,J. ( 2017 ) Inferring interactions in complex microbial communities from nucleotide sequence data and environmental parameters PLOS ONE 12 (3) :e0173765.

http://dx.doi.org/10.1371%2Fjournal.pone.0173765
2016 Gossner,M.M., Lewinsohn,T.M., Kahl,T., Grassein,F., Boch,S., Prati,D., Birkhofer,K., Renner,S.C., Sikorski,J., Wubet,T., Arndt,H., Baumgartner,V., Blaser,S., Blüthgen,N., Börschig,C., Buscot,F., Diekötter,T., Jorge,L.R., Jung,K., Keyel,A.C., Klein,A.-M., Klemmer,S., Krauss,J., Lange,M., Müller,J., Overmann,J., Pasalic,E., Penone,C., Perovic,D.J., Purschke,O., Schall,P., Socher,S.A., Sonnemann,I., Tschapka,M., Tscharntke,T., Türke,M., Venter,P.C., Weiner,C.N., Werner,M., Wolters,V., Wurst,S., Westphal,C., Fischer,M., Weisser,W.W., Allan,E. ( 2016 ) Land-use intensification causes multitrophic homogenization of grassland communities Nature 540 (7632) :266-269.

http://dx.doi.org/10.1038/nature20575
2016 Soliveres,S., vanderPlas,F., Manning,P., Prati,D., Gossner,M.M., Renner,S.C., Alt,F., Arndt,H., Baumgartner,V., Binkenstein,J., Birkhofer,K., Blaser,S., Blüthgen,N., Boch,S., Böhm,S., Börschig,C., Buscot,F., Diekötter,T., Heinze,J., Hölzel,N., Jung,K., Klaus,V.H., Kleinebecker,T., Klemmer,S., Krauss,J., Lange,M., Morris,E.K., Müller,J., Oelmann,Y., Overmann,J., Pasalic,E., Rillig,M.C., Schaefer,H.M., Schloter,M., Schmitt,B., Schöning,I., Schrumpf,M., Sikorski,J., Socher,S.A., Solly,E.F., Sonnemann,I., Sorkau,E., Steckel,J., Steffan-Dewenter,I., Stempfhuber,B., Tschapka,M., Türke,M., Venter,P.C., Weiner,C.N., Weisser,W.W., Werner,M., Westphal,C., Wilcke,W., Wolters,V., Wubet,T., Wurst,S., Fischer,M., Allan,E. ( 2016 ) Biodiversity at multiple trophic levels is needed for ecosystem multifunctionality Nature advance online publication

http://dx.doi.org/10.1038/nature19092
2016 Doijad,S., Imirzalioglu,C., Yao,Y., Pati,N.B., Falgenhauer,L., Hain,T., Foesel,B.U., Abt,B., Overmann,J., Mirambo,M.M., Mshana,S.E., Chakraborty,T. ( 2016 ) Enterobacter bugandensis sp. nov., isolated from neonatal blood International Journal of Systematic and Evolutionary Microbiology 66 (2) :968-974.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000821
2016 Foesel,B.U., Geppert,A., Rohde,M., Overmann,J. ( 2016 ) Parviterribacter kavangonensis gen. nov., sp. nov. and Parviterribacter multiflagellatus sp. nov., novel members of Parviterribacteraceae fam. nov. within the order Solirubrobacterales, and emended descriptions of the classes Thermoleophilia and Rubrobacteria and their orders and families International Journal of Systematic and Evolutionary Microbiology 66 (2) :652-665.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000770
2016 Foesel,B.U., Mayer,S., Luckner,M., Wanner,G., Rohde,M., Overmann,J. ( 2016 ) Occallatibacter riparius gen. nov., sp. nov. and Occallatibacter savannae sp. nov., acidobacteria isolated from Namibian soils, and emended description of the family Acidobacteriaceae International Journal of Systematic and Evolutionary Microbiology 66 (1) :219-229.

http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.000700
2016 Lagkouvardos,I., Pukall,R., Abt,B., Foesel,B.U., Meier-Kolthoff,J.P., Kumar,N., Bresciani,A., Martínez,I., Just,S., Ziegler,C., Brugiroux,S., Garzetti,D., Wenning,M., Bui,T.P.N., Wang,J., Hugenholtz,F., Plugge,C.M., Peterson,D.A., Hornef,M.W., Baines,J.F., Smidt,H., Walter,J., Kristiansen,K., Nielsen,H.B., Haller,D., Overmann,J., Stecher,B., Clavel,T. ( 2016 ) The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota Nature Microbiology 1 :16131.

http://dx.doi.org/10.1038/nmicrobiol.2016.131
2016 Cota,I., Bunk,B., Spröer,C., Overmann,J., Konig,C., Casadesus,J. ( 2016 ) OxyR-dependent formation of DNA methylation patterns in OpvABOFF and OpvABON cell lineages of Salmonella enterica Nucleic Acids Res 44 (8) :3595-609.

2016 Zaburannyi,N., Bunk,B., Maier,J., Overmann,J., Muller,R. ( 2016 ) Genome Analysis of the Fruiting Body-Forming Myxobacterium Chondromyces crocatus Reveals High Potential for Natural Product Biosynthesis Appl Environ Microbiol 82 (6) :1945-57.

2016 Ghosh,H., Doijad,S., Bunk,B., Falgenhauer,L., Yao,Y., Sproer,C., Gentil,K., Schmiedel,J., Imirzalioglu,C., Overmann,J., Chakraborty,T. ( 2016 ) Detection of translocatable units in a blaCTX-M-15 extended-spectrum beta-lactamase-producing ST131 Escherichia coli isolate using a hybrid sequencing approach Int J Antimicrob Agents 47 (3) :245-7.

2016 Falgenhauer,L., Waezsada,S.E., Gwozdzinski,K., Ghosh,H., Doijad,S., Bunk,B., Spröer,C., Imirzalioglu,C., Seifert,H., Irrgang,A., Fischer,J., Guerra,B., Kasbohrer,A., Overmann,J., Goesmann,A., Chakraborty,T. ( 2016 ) Chromosomal Locations of mcr-1 and blaCTX-M-15 in Fluoroquinolone-Resistant Escherichia coli ST410 Emerg Infect Dis 22 (9)

2016 Crenn,K., Serpin,D., Lepleux,C., Overmann,J., Jeanthon,C. ( 2016 ) Silicimonas algicola gen. nov., sp. nov., a novel member of the Roseobacter clade isolated from the cell surface of the marine diatom Thalassiosira delicatula Int J Syst Evol Microbiol

2016 Wüst,P.K., Foesel,B.U., Geppert,A., Huber,K.J., Luckner,M., Wanner,G., Overmann,J. ( 2016 ) Brevitalea aridisoli, B. deliciosa, and Arenimicrobium luteum, three novel species of Acidobacteria subdivision 4 (class Blastocatellia) isolated from Namibian savanna soil and description of the novel family Pyrinomonadaceae Int J Syst Evol Microbiol

2016 Huber,K.J., Geppert,A.M., Wanner,G., Fosel,B.U., Wust,P.K., Overmann,J. ( 2016 ) Vicinamibacter silvestris - The first representative of the globally widespread subdivision 6 Acidobacteria isolated from subtropical savannah soil Int J Syst Evol Microbiol

2016 Soliveres,S., Manning,P., Prati,D., Gossner,M.M., Alt,F., Arndt,H., Baumgartner,V., Binkenstein,J., Birkhofer,K., Blaser,S., Bluthgen,N., Boch,S., Bohm,S., Borschig,C., Buscot,F., Diekotter,T., Heinze,J., Holzel,N., Jung,K., Klaus,V.H., Klein,A.M., Kleinebecker,T., Klemmer,S., Krauss,J., Lange,M., Morris,E.K., Muller,J., Oelmann,Y., Overmann,J., Pasalic,E., Renner,S.C., Rillig,M.C., Schaefer,H.M., Schloter,M., Schmitt,B., Schoning,I., Schrumpf,M., Sikorski,J., Socher,S.A., Solly,E.F., Sonnemann,I., Sorkau,E., Steckel,J., Steffan-Dewenter,I., Stempfhuber,B., Tschapka,M., Turke,M., Venter,P., Weiner,C.N., Weisser,W.W., Werner,M., Westphal,C., Wilcke,W., Wolters,V., Wubet,T., Wurst,S., Fischer,M., Allan,E. ( 2016 ) Locally rare species influence grassland ecosystem multifunctionality Philos Trans R Soc Lond B Biol Sci 371 (1694)

http://www.ncbi.nlm.nih.gov/pubmed/27114572
2016 Stempfhuber,B., Richter-Heitmann,T., Regan,K.M., Kölbl,A., Kaul,P., Marhan,S., Sikorski,J., Overmann,J., Friedrich,M.W., Kandeler,E., Schloter,M. ( 2016 ) Spatial interaction of archaeal ammonia-oxidizers and nitrite-oxidizing bacteria in an unfertilized grassland soil Frontiers in Microbiology 6

http://www.frontiersin.org/Journal/Abstract.aspx?s=1102&name=terrestrial_microbiology&ART_DOI=10.3389/fmicb.2015.01567
2016 Trautwein,K., Will,S.E., Hulsch,R., Maschmann,U., Wiegmann,K., Hensler,M., Michael,V., Ruppersberg,H., Wunsch,D., Feenders,C., Neumann-Schaal,M., Kaltenhauser,S., Ulbrich,M., Schmidt-Hohagen,K., Blasius,B., Petersen,J., Schomburg,D., Rabus,R. ( 2016 ) Native plasmids restrict growth of Phaeobacter inhibens DSM 17395: Energetic costs of plasmids assessed by quantitative physiological analyses Environ Microbiol 18 (12) :4817-4829.

https://www.ncbi.nlm.nih.gov/pubmed/27233797
2016 Thogersen,M.S., Delpin,M.W., Melchiorsen,J., Kilstrup,M., Mansson,M., Bunk,B., Sproer,C., Overmann,J., Nielsen,K.F., Gram,L. ( 2016 ) Production of the Bioactive Compounds Violacein and Indolmycin Is Conditional in a maeA Mutant of Pseudoalteromonas luteoviolacea S4054 Lacking the Malic Enzyme Front Microbiol 7 :1461.

https://www.ncbi.nlm.nih.gov/pubmed/27695447
2016 Tashkandy,N., Sabban,S., Fakieh,M., Meier-Kolthoff,J.P., Huang,S., Tindall,B.J., Rohde,M., Baeshen,M.N., Baeshen,N.A., Lapidus,A., Copeland,A., Pillay,M., Reddy,T.B., Huntemann,M., Pati,A., Ivanova,N., Markowitz,V., Woyke,T., Goker,M., Klenk,H.P., Kyrpides,N.C., Hahnke,R.L. ( 2016 ) High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T) Stand Genomic Sci 11 :42.

https://www.ncbi.nlm.nih.gov/pubmed/27313837
2016 Nabhan,S., Bunk,B., Sproer,C., Liu,Z., Bryant,D.A., Overmann,J. ( 2016 ) Genome Sequence of Prosthecochloris sp. Strain CIB 2401 of the Phylum Chlorobi Genome Announc 4 (6)

https://www.ncbi.nlm.nih.gov/pubmed/27811102
2016 Jaenicke,S., Bunk,B., Wibberg,D., Sproer,C., Hersemann,L., Blom,J., Winkler,A., Schatschneider,S., Albaum,S.P., Kolliker,R., Goesmann,A., Puhler,A., Overmann,J., Vorholter,F.J. ( 2016 ) Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974T (ATCC 19319T) Genome Announc 4 (6)

https://www.ncbi.nlm.nih.gov/pubmed/27908994
2016 Kohn,T., Heuer,A., Jogler,M., Vollmers,J., Boedeker,C., Bunk,B., Rast,P., Borchert,D., Glockner,I., Freese,H.M., Klenk,H.P., Overmann,J., Kaster,A.K., Rohde,M., Wiegand,S., Jogler,C. ( 2016 ) Fuerstia marisgermanicae gen. nov., sp. nov., an Unusual Member of the Phylum Planctomycetes from the German Wadden Sea Front Microbiol 7 :2079.

https://www.ncbi.nlm.nih.gov/pubmed/28066393
2016 Huang,S., Vieira,S., Bunk,B., Riedel,T., Sproer,C., Overmann,J. ( 2016 ) First Complete Genome Sequence of a Subdivision 6 Acidobacterium Strain Genome Announc 4 (3)

https://www.ncbi.nlm.nih.gov/pubmed/27231379
2016 Panschin,I., Huang,S., Meier-Kolthoff,J.P., Tindall,B.J., Rohde,M., Verbarg,S., Lapidus,A., Han,J., Trong,S., Haynes,M., Reddy,T.B., Huntemann,M., Pati,A., Ivanova,N.N., Mavromatis,K., Markowitz,V., Woyke,T., Goker,M., Klenk,H.P., Kyrpides,N.C., Hahnke,R.L. ( 2016 ) Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050(T) (DSM 19838(T)) and Gramella portivictoriae UST040801-001(T) (DSM 23547(T)), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005 Stand Genomic Sci 11 :37.

https://www.ncbi.nlm.nih.gov/pubmed/27274783
2016 Patzelt,D., Michael,V., Pauker,O., Ebert,M., Tielen,P., Jahn,D., Tomasch,J., Petersen,J., Wagner-Dobler,I. ( 2016 ) Gene Flow Across Genus Barriers - Conjugation of Dinoroseobacter shibae's 191-kb Killer Plasmid into Phaeobacter inhibens and AHL-mediated Expression of Type IV Secretion Systems Front Microbiol 7 :742.

https://www.ncbi.nlm.nih.gov/pubmed/27303368
2016 Poehlein,A., Freese,H., Daniel,R., Simeonova,D.D. ( 2016 ) Genome sequence of Shinella sp. strain DD12, isolated from homogenized guts of starved Daphnia magna Stand Genomic Sci 11 :14.

https://www.ncbi.nlm.nih.gov/pubmed/26865909
2016 Michael,V., Frank,O., Bartling,P., Scheuner,C., Goker,M., Brinkmann,H., Petersen,J. ( 2016 ) Biofilm plasmids with a rhamnose operon are widely distributed determinants of the 'swim-or-stick' lifestyle in roseobacters ISME J 10 (10) :2498-513.

https://www.ncbi.nlm.nih.gov/pubmed/26953602
2016 Belda,E., vanHeck,R.G., JoseLopez-Sanchez,M., Cruveiller,S., Barbe,V., Fraser,C., Klenk,H.P., Petersen,J., Morgat,A., Nikel,P.I., Vallenet,D., Rouy,Z., Sekowska,A., MartinsDosSantos,V.A., deLorenzo,V., Danchin,A., Medigue,C. ( 2016 ) The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis Environ Microbiol 18 (10) :3403-3424.

https://www.ncbi.nlm.nih.gov/pubmed/26913973
2016 Sohngen,C., Podstawka,A., Bunk,B., Gleim,D., Vetcininova,A., Reimer,L.C., Ebeling,C., Pendarovski,C., Overmann,J. ( 2016 ) BacDive - The Bacterial Diversity Metadatabase in 2016 Nucleic Acids Res 44 (D1) :D581-5.

http://www.ncbi.nlm.nih.gov/pubmed/26424852
2016 Wynn,T., Overmann,K., Coolidge,F. ( 2016 ) The false dichotomy: a refutation of the Neandertal indistinguishability claim J Anthropol Sci 94 :201-21.

https://www.ncbi.nlm.nih.gov/pubmed/26708102
2016 Wust,P.K., Nacke,H., Kaiser,K., Marhan,S., Sikorski,J., Kandeler,E., Daniel,R., Overmann,J. ( 2016 ) Estimates of Soil Bacterial Ribosome Content and Diversity Are Significantly Affected by the Nucleic Acid Extraction Method Employed Appl Environ Microbiol 82 (9) :2595-607.

https://www.ncbi.nlm.nih.gov/pubmed/26896137
2016 Overmann,K.M., Florin,T.A. ( 2016 ) Nebulised hypertonic saline may be less effective than previously reported in reducing hospital length of stay and admission rate in acute bronchiolitis Evid Based Med 21 (4) :143.

https://www.ncbi.nlm.nih.gov/pubmed/27222561
2016 Heinrich,D., Sturos,M., Smith,K., Vernau,W., Overmann,J. ( 2016 ) What is your diagnosis? Liver aspirate from a cat Vet Clin Pathol 45 (3) :513-4.

https://www.ncbi.nlm.nih.gov/pubmed/27378716
2016 Beims,H., Overmann,A., Fulde,M., Steinert,M., Bergmann,S. ( 2016 ) Isolation of Staphylococcus sciuri from horse skin infection Open Vet J 6 (3) :242-246.

https://www.ncbi.nlm.nih.gov/pubmed/28116248
2016 Sikorski,J. ( 2016 ) Schmelztiegel Bodenbakterien Biologie in unserer Zeit 46 (6) :358-365.

http://dx.doi.org/10.1002/biuz.201610607
2015 Bajerski,F., Senula,A., Keller,J., Overmann,J. ( 2015 ) Novel insights into cellular processes affecting the cryopreservation of bacterial and eukaryotic cells Cryobiology 71 (3) :549.

http://www.sciencedirect.com/science/article/pii/S001122401500303X
2015 Gugliandolo,C., Lentini,V., Bunk,B., Overmann,J., Italiano,F., Maugeri,T.L. ( 2015 ) Changes in prokaryotic community composition accompanying a pronounced temperature shift of a shallow marine thermal brine pool (Panarea Island, Italy) Extremophiles 19 (3) :547-59.

2015 Burghartz,M., Bunk,B., Sproer,C., Voget,S., Daniel,R., Overmann,J., Jahn,M. ( 2015 ) Complete Genome Sequence of the Urethral Catheter Isolate Myroides sp. A21 3 (2)

2015 Riedel,T., Bunk,B., Thurmer,A., Spröer,C., Brzuszkiewicz,E., Abt,B., Gronow,S., Liesegang,H., Daniel,R., Overmann,J. ( 2015 ) Genome Resequencing of the Virulent and Multidrug-Resistant Reference Strain Clostridium difficile 630 Genome Announc 3 (2)

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